Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000436-TA|BGIBMGA000436-PA|IPR000618|Insect cuticle
protein
(124 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 35 0.016
05_03_0565 - 15509949-15511304 28 2.5
06_03_1205 - 28406183-28406218,28406462-28406548,28406769-284068... 27 3.3
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 27 3.3
08_02_0707 - 20212190-20214592 27 5.7
11_03_0010 - 8922361-8922375,8923888-8924610 26 7.5
10_08_0898 + 21424379-21424792,21424974-21425723 26 7.5
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998... 26 7.5
08_02_1446 + 27156449-27156790,27157961-27158042,27158698-271587... 26 10.0
05_03_0263 + 11234850-11235044,11235413-11237341 26 10.0
03_03_0191 + 15302384-15302422,15302780-15303246,15303356-153035... 26 10.0
02_05_0106 - 25877997-25878677,25878951-25879222,25879317-25879476 26 10.0
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 35.1 bits (77), Expect = 0.016
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 81 KGYYSLHQPDGSIRHVDYHGDHHSGFHADVKYSTHHIVPHHHH 123
KG + H D RH HGDHH +H HH HHH
Sbjct: 532 KGRHHRHHHDHRHRHGHSHGDHHHHYHGG-----HHQRRRHHH 569
Score = 26.2 bits (55), Expect = 7.5
Identities = 14/39 (35%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 88 QPDGSIRHVDYH--GDHHSGFHADVKYSTHHIVPHHHHY 124
+PD R H G HH H H HHHHY
Sbjct: 519 EPDDDYRARRRHQKGRHHRHHHDHRHRHGHSHGDHHHHY 557
>05_03_0565 - 15509949-15511304
Length = 451
Score = 27.9 bits (59), Expect = 2.5
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 63 PHTGDHKSQHESRDG---DVVKGYYSLHQP--DGSIRHVDYHGDHHSGFHADVKYSTHHI 117
P GD +S + DG V++G Y L + G+ V D +G H VK
Sbjct: 2 PPAGDDESPAATGDGYSKKVLQGRYELGRVLGQGASSKVYRARDARTGAHVAVKAIRKQQ 61
Query: 118 VPHHH 122
PHHH
Sbjct: 62 QPHHH 66
>06_03_1205 -
28406183-28406218,28406462-28406548,28406769-28406830,
28407968-28408184,28408793-28408957,28409145-28409250,
28409830-28410071,28410493-28410605,28410848-28411043,
28411681-28411827,28412034-28412218,28412478-28412592,
28413237-28413728
Length = 720
Score = 27.5 bits (58), Expect = 3.3
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 5/26 (19%)
Query: 99 HGDHHSGFHADVKYSTHHIVPHHHHY 124
HGDHH G H HH H HH+
Sbjct: 70 HGDHHHGHH-----HHHHGHGHSHHH 90
>06_03_0867 +
25534760-25539620,25540662-25540857,25540957-25541104,
25541673-25541751,25542151-25542238,25542330-25542600,
25542676-25542718,25542801-25542904,25543374-25543790
Length = 2068
Score = 27.5 bits (58), Expect = 3.3
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 95 HVDYHGDHHSGFHADVKYSTHHIVPHHHH 123
H+ H HH H + HH HHHH
Sbjct: 58 HLPDHHHHHHHHHPPPRVQHHH---HHHH 83
>08_02_0707 - 20212190-20214592
Length = 800
Score = 26.6 bits (56), Expect = 5.7
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 87 HQPDGSIRHVDYHGDHHSGFHADVKYSTHHIVPHHHH 123
H GS H H HS H+ H HH+H
Sbjct: 490 HAHGGSCSHSHSHSHSHSHSHSHSHSHVHGHEDHHNH 526
Score = 26.2 bits (55), Expect = 7.5
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 61 SDPHTGDHKSQHESRDGDVVKGYYSLHQPDGSIRHV-------DYHGDHHSGFHADVKYS 113
S H+ H H S V G+ H D +++ V ++HGD + H D +
Sbjct: 499 SHSHSHSHSHSH-SHSHSHVHGHEDHHNHDHALQGVNHNGACCEHHGDANKSHHHDHHHD 557
Query: 114 THHIVPHHH 122
+ + HH+
Sbjct: 558 SSNEESHHN 566
>11_03_0010 - 8922361-8922375,8923888-8924610
Length = 245
Score = 26.2 bits (55), Expect = 7.5
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 75 RDGDVVKGYYSLHQPDGSIRHVD 97
RDG V YS P GSIR+VD
Sbjct: 195 RDGSDVPAAYSTGCPAGSIRNVD 217
>10_08_0898 + 21424379-21424792,21424974-21425723
Length = 387
Score = 26.2 bits (55), Expect = 7.5
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 78 DVVKGYYSLHQPDGSIRHVDYHGDHHSGFHADVKYST-HHIVPHHHHY 124
D+ G + H G I G HH G YS HH HHH+Y
Sbjct: 12 DLGMGMSTYHNASGGIAAAPMMG-HHGGGGGGGGYSAAHHH--HHHYY 56
>07_03_0965 - 22996575-22999112,22999202-22999636,22999717-22999801,
22999888-22999957,23000050-23000293,23000396-23000482,
23000655-23000706,23000830-23001226,23001324-23001648,
23001748-23001914,23002007-23002547
Length = 1646
Score = 26.2 bits (55), Expect = 7.5
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 55 DFEYKVSDPHTGDHKSQHESRDGDVVKGYYSLHQPDGSIRHVDYHGDHHSGFHADVKYST 114
D E V D +GD KS H + G +H P+ ++ + G +D K S
Sbjct: 992 DSEKTVQDGPSGDDKSSHPQKGGYDHNYAVPVHLPNFAL--MPPTSAAGGGGQSDKKLSD 1049
Query: 115 HHIVPH 120
HH PH
Sbjct: 1050 HH--PH 1053
>08_02_1446 +
27156449-27156790,27157961-27158042,27158698-27158792,
27159421-27159492,27159572-27159651,27159728-27159827,
27160064-27160141,27160408-27160455,27160570-27160638,
27161035-27161175,27161262-27161516
Length = 453
Score = 25.8 bits (54), Expect = 10.0
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 62 DPHTGDHKSQHESRDGDVVKGYYSLHQPD 90
DP T DH +E+ D + + HQ D
Sbjct: 343 DPETTDHPQDYETEDASQISEAHLDHQAD 371
>05_03_0263 + 11234850-11235044,11235413-11237341
Length = 707
Score = 25.8 bits (54), Expect = 10.0
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 60 VSDPHTGDHK---SQHESRDGDVVKGYYSLHQPDGSIRHVDYHGDHH 103
+SD HT S H+ R +V ++ LHQ DG H++ GD +
Sbjct: 460 ISDLHTIHEDVVTSAHQKRAALIVLPFHKLHQMDG---HMESLGDEY 503
>03_03_0191 +
15302384-15302422,15302780-15303246,15303356-15303563,
15303723-15303794,15304295-15304430,15304619-15304890,
15305197-15305345,15305818-15305947,15306244-15306258
Length = 495
Score = 25.8 bits (54), Expect = 10.0
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 56 FEYKVSDPHTGDHKSQHESRDGDV-VKGYYSLHQPDGSIR-HVDYHG 100
FE K+ D + S+HE+ G V + S H+ D + HVD G
Sbjct: 17 FEGKLKDGFARSNNSEHENGAGTVSISSKKSKHRVDSEKKPHVDISG 63
>02_05_0106 - 25877997-25878677,25878951-25879222,25879317-25879476
Length = 370
Score = 25.8 bits (54), Expect = 10.0
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 90 DGSIRHVDYHGDHHSGFHADVKYSTHHIVPHHHHY 124
DGS D HG F D+ S ++PHHHH+
Sbjct: 166 DGSPCWFDDHGAV-GAFMPDLS-SPRQLLPHHHHH 198
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.137 0.450
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,348,527
Number of Sequences: 37544
Number of extensions: 124604
Number of successful extensions: 308
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 293
Number of HSP's gapped (non-prelim): 21
length of query: 124
length of database: 14,793,348
effective HSP length: 74
effective length of query: 50
effective length of database: 12,015,092
effective search space: 600754600
effective search space used: 600754600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)
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