GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000436-TA|BGIBMGA000436-PA|IPR000618|Insect cuticle
protein
         (124 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    27   0.082
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.25 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   5.4  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 26.6 bits (56), Expect = 0.082
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 91  GSIRHVDYHGDHHSGFHADVKYSTHHIVPHHHHY 124
           G + H+D H  HH+  HA + +S      H   Y
Sbjct: 271 GGVYHLDNHHVHHANHHAILGHSGFLCERHQKRY 304


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.0 bits (52), Expect = 0.25
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 3/40 (7%)

Query: 85  SLHQPDGSIRHVDYHGDHHSGFHADV-KYSTHHIVPHHHH 123
           +++   G   H   HG  HS  HA    + +H   PHH H
Sbjct: 407 NVYSTPGPHHHTMGHG--HSHIHATPHHHHSHAATPHHQH 444


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 115 HHIVPHHHH 123
           HH+  HHHH
Sbjct: 142 HHLQNHHHH 150



 Score = 20.2 bits (40), Expect = 7.1
 Identities = 5/10 (50%), Positives = 8/10 (80%)

Query: 115 HHIVPHHHHY 124
           HH + +HHH+
Sbjct: 141 HHHLQNHHHH 150


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 119 PHHHHY 124
           PHHHH+
Sbjct: 350 PHHHHH 355


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,924
Number of Sequences: 429
Number of extensions: 1070
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 124
length of database: 140,377
effective HSP length: 51
effective length of query: 73
effective length of database: 118,498
effective search space:  8650354
effective search space used:  8650354
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.9 bits)
S2: 39 (19.8 bits)