Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000435-TA|BGIBMGA000435-PA|IPR000618|Insect cuticle
protein
         (109 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       25   0.13 
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    24   0.40 
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   2.8  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 25.4 bits (53), Expect = 0.13
 Identities = 13/44 (29%), Positives = 21/44 (47%)

Query: 54  YKVSDPHTGDHKSQHESRDGDVVKGYYSLHQPDGSIRHVDYHGD 97
           Y V   +   ++ +  + DG +V  Y  +   DGS+R V Y  D
Sbjct: 195 YVVEGRNYRKYRVEERTSDGFIVGEYGVVSHDDGSLRGVRYTAD 238


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 23.8 bits (49), Expect = 0.40
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 84  QPDGSIRHVDYHGDHHSGLVTNI 106
           Q DG++RH+D + D  +G +  +
Sbjct: 64  QADGNVRHLDEYLDVDAGTIAKL 86


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 84  QPDGSIRHVDY 94
           QPD +I H DY
Sbjct: 137 QPDNAIEHSDY 147


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.134    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,320
Number of Sequences: 317
Number of extensions: 745
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 109
length of database: 114,650
effective HSP length: 49
effective length of query: 60
effective length of database: 99,117
effective search space:  5947020
effective search space used:  5947020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
S2: 38 (19.4 bits)