Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000435-TA|BGIBMGA000435-PA|IPR000618|Insect cuticle
protein
         (109 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.20 
SB_34999| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.9  
SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9)                     28   1.9  
SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37)                     26   5.8  
SB_4239| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   7.7  
SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2)                   26   7.7  

>SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2250

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 51   DFEYKVSDPHTGDHKSQHESRDGDVVKGY--YSLHQPDGSIRHVDYHGD 97
            D  +   +   GD   +H+  DGD V  +  Y+    D  +RH DY GD
Sbjct: 1863 DVRHDEYNDEDGDSDVRHDDYDGDSVVRHDDYNDDNGDSDVRHDDYDGD 1911



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 5/52 (9%)

Query: 51   DFEYKVSDPHTGDHKSQHESR-----DGDVVKGYYSLHQPDGSIRHVDYHGD 97
            D  +  ++   GD   +H+       D DV    Y+    D  +RH DY GD
Sbjct: 1835 DVRHDDNNDDDGDSDVRHDDNNDDDGDSDVRHDEYNDEDGDSDVRHDDYDGD 1886


>SB_34999| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 2/31 (6%)

Query: 62  GDHKSQHESRDG--DVVKGYYSLHQPDGSIR 90
           GDH+S HE + G  D+ +G ++  +P+  IR
Sbjct: 106 GDHQSHHEEKRGLQDLAQGLHACARPEKLIR 136


>SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9)
          Length = 125

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)

Query: 78  GYYSLHQPDGSIRHVDYHG-DHHSG 101
           GY+  H  D  I H DY G DH+ G
Sbjct: 69  GYHGYHDHDVHIHHHDYGGHDHYDG 93


>SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37)
          Length = 1481

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 61  TGDHKSQHESRDGDVVKGYYSLHQPDGSIRHVDYHGD 97
           +  H S H+  D D + G+ +  Q +   R +DY G+
Sbjct: 123 SSSHMSAHKM-DDDYLSGFAADEQEESDARELDYEGE 158


>SB_4239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 10/55 (18%)

Query: 53  EYKVSDPHTGDHKSQHESRDGDVVKGYYSLHQPDGSIRHVDYHGDHHSGLVTNIV 107
           EY +   + GD  + H+S       GYYS HQ D    H  +H    SG +++++
Sbjct: 33  EYSID--YVGDQSAHHDS-------GYYSSHQNDYHHGHKRHH-RRSSGWLSSLI 77


>SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2)
          Length = 1716

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 60  HTGDHKSQHESRDGDVVKGYYSLHQPDGSIRHVDYHGDHHS 100
           +TG+H  QH ++      G +  + P   I H   HGDH++
Sbjct: 379 YTGNHDDQHSNQCRR--PGNHG-NLPSNQIGHTGNHGDHYT 416


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,088,574
Number of Sequences: 59808
Number of extensions: 106647
Number of successful extensions: 270
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 267
Number of HSP's gapped (non-prelim): 7
length of query: 109
length of database: 16,821,457
effective HSP length: 72
effective length of query: 37
effective length of database: 12,515,281
effective search space: 463065397
effective search space used: 463065397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)