GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000435-TA|BGIBMGA000435-PA|IPR000618|Insect cuticle
protein
         (109 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    24   4.7  
SPAC11D3.01c |||conserved fungal protein|Schizosaccharomyces pom...    24   6.2  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    24   6.2  
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P...    23   8.1  
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    23   8.1  

>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 53  EYKVSDPHTGDHKSQHESRDGDVVKGYYSLHQPDGSIRHVDYHGDHHSG 101
           +Y  S P T  + S+ ++   D V G    +   GS  H   HG  H G
Sbjct: 173 DYSQSYP-TDTYGSRQKATPSDTVGGGAYDYSSSGSHTHGGSHGTEHRG 220


>SPAC11D3.01c |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 79

 Score = 23.8 bits (49), Expect = 6.2
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 53 EYKVSDPHTGDHKSQHESRDGDVVKGY-YSLHQPDGS 88
          E +  + H G+   +H+   G+V  GY  ++H P+ S
Sbjct: 28 EKEYLEEHEGEVGEEHQKNTGNVRGGYKAAMHNPNVS 64


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 23.8 bits (49), Expect = 6.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 50   FDFEYKVSDPHTGDHKSQHESRDGDVVKGYYSLHQPDGSI 89
            F+ +Y +  P TGD  + H +RD  V   + S  +  G I
Sbjct: 2928 FNPDYALFLPVTGDATTFHPNRDSSVNPDHLSFFKFTGRI 2967


>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
           Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 389

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 50  FDFEYKVSDPHTGDHKSQHESRDGDVVKGYYSLH 83
           F+ E +VS P+       H+  +  V K Y++LH
Sbjct: 142 FEVELRVSHPNWAFVSWSHDDLNELVDKSYHNLH 175


>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 70  SRDGDVVKGYYSLHQPDGSIRHVDYHGDHHSGL 102
           SRD   +      H  D  +  V+YH  HH+ L
Sbjct: 216 SRDTRCLTPVKDFHYDDSPVNDVEYH-PHHTNL 247


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 413,043
Number of Sequences: 5004
Number of extensions: 13192
Number of successful extensions: 27
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 5
length of query: 109
length of database: 2,362,478
effective HSP length: 64
effective length of query: 45
effective length of database: 2,042,222
effective search space: 91899990
effective search space used: 91899990
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)