Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000434-TA|BGIBMGA000434-PA|IPR000618|Insect cuticle
protein
         (114 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc...    28   0.42 
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        25   3.9  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    25   3.9  
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    24   6.8  
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    23   9.0  

>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 27.9 bits (59), Expect = 0.42
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 80  YSLHQPDGSIRHVDYHGDHHSGLVSCNFNSSVKL 113
           Y L   +GS+ HVD+H  H   ++SC+ + ++ L
Sbjct: 304 YVLPGHEGSVNHVDFH-PHQDIILSCSSDRTIFL 336


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 5/41 (12%)

Query: 60  HTGDHKSQHESRDGDDVKGY----YSL-HQPDGSIRHVDYH 95
           H   H  Q +  DGD+V GY    Y L HQ  G I   + H
Sbjct: 210 HYSGHGGQTKDLDGDEVDGYDETIYPLDHQYAGQIIDDEMH 250


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 53  EYKVSDPHTGDHKSQHESRDGDDVKGYYSLHQPDGSIRHVDYHGDHHSGLVSCNFNSSVK 112
           +Y  S P T  + S+ ++   D V G    +   GS  H   HG  H G    N N++ K
Sbjct: 173 DYSQSYP-TDTYGSRQKATPSDTVGGGAYDYSSSGSHTHGGSHGTEHRGGSYGNDNTANK 231


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 12/37 (32%), Positives = 16/37 (43%)

Query: 70  SRDGDDVKGYYSLHQPDGSIRHVDYHGDHHSGLVSCN 106
           S  GD     Y   + D ++ HV Y  DH  G+   N
Sbjct: 547 SAGGDGKIVVYQREKHDEALWHVAYEQDHAHGVYEIN 583


>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 11/39 (28%), Positives = 17/39 (43%)

Query: 70  SRDGDDVKGYYSLHQPDGSIRHVDYHGDHHSGLVSCNFN 108
           SRD   +      H  D  +  V+YH  H +  ++ N N
Sbjct: 216 SRDTRCLTPVKDFHYDDSPVNDVEYHPHHTNLYIAVNDN 254


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.135    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 478,609
Number of Sequences: 5004
Number of extensions: 16259
Number of successful extensions: 32
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 5
length of query: 114
length of database: 2,362,478
effective HSP length: 64
effective length of query: 50
effective length of database: 2,042,222
effective search space: 102111100
effective search space used: 102111100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)