GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000434-TA|BGIBMGA000434-PA|IPR000618|Insect cuticle
protein
         (114 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0010 - 8922361-8922375,8923888-8924610                           30   0.50 
06_01_0177 + 1383074-1383223,1383430-1383673,1383792-1383859,138...    28   2.0  
05_05_0164 - 22847641-22847834,22848033-22848288,22848634-22849266     28   2.0  
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485...    27   3.6  
08_02_1446 + 27156449-27156790,27157961-27158042,27158698-271587...    27   4.7  
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998...    26   6.2  
07_03_0361 + 17215312-17216217                                         26   6.2  

>11_03_0010 - 8922361-8922375,8923888-8924610
          Length = 245

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 14/23 (60%), Positives = 15/23 (65%)

Query: 71  RDGDDVKGYYSLHQPDGSIRHVD 93
           RDG DV   YS   P GSIR+VD
Sbjct: 195 RDGSDVPAAYSTGCPAGSIRNVD 217


>06_01_0177 +
           1383074-1383223,1383430-1383673,1383792-1383859,
           1384044-1384091,1384188-1384312,1384461-1384569,
           1384785-1384826
          Length = 261

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 4/41 (9%)

Query: 73  GDDVKGYYS--LHQPDGSIRHVDYHGDHHSGLVSCNFNSSV 111
           GDD++G  +  L Q DG   H  YHG++ SG  + + NS +
Sbjct: 63  GDDMRGARNTALAQSDGL--HYYYHGENSSGEATTSRNSEI 101


>05_05_0164 - 22847641-22847834,22848033-22848288,22848634-22849266
          Length = 360

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 74  DDVKGYYSLHQPDGSIRHVDYHGDHHSGLVSCNFNSSVKL 113
           +DV  YY L     +   VD +GD+  GL+  N NS  K+
Sbjct: 177 NDVTMYYLLPFRATNFPTVDQYGDYLIGLLQSNLNSLYKM 216


>05_03_0235 -
           10747649-10748118,10748226-10748314,10748477-10748574,
           10748934-10749046,10749107-10749200,10749557-10749589,
           10749734-10749851,10750110-10750210,10751036-10751233,
           10751337-10751471,10751752-10751830,10753650-10753738,
           10753835-10753987,10754100-10754285
          Length = 651

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/23 (47%), Positives = 12/23 (52%)

Query: 77  KGYYSLHQPDGSIRHVDYHGDHH 99
           KG +  H  D   RH   HGDHH
Sbjct: 532 KGRHHRHHHDHRHRHGHSHGDHH 554


>08_02_1446 +
           27156449-27156790,27157961-27158042,27158698-27158792,
           27159421-27159492,27159572-27159651,27159728-27159827,
           27160064-27160141,27160408-27160455,27160570-27160638,
           27161035-27161175,27161262-27161516
          Length = 453

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 58  DPHTGDHKSQHESRDGDDVKGYYSLHQPD 86
           DP T DH   +E+ D   +   +  HQ D
Sbjct: 343 DPETTDHPQDYETEDASQISEAHLDHQAD 371


>07_03_0965 - 22996575-22999112,22999202-22999636,22999717-22999801,
            22999888-22999957,23000050-23000293,23000396-23000482,
            23000655-23000706,23000830-23001226,23001324-23001648,
            23001748-23001914,23002007-23002547
          Length = 1646

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 51   DFEYKVSDPHTGDHKSQHESRDGDDVKGYYSLHQPD 86
            D E  V D  +GD KS H  + G D      +H P+
Sbjct: 992  DSEKTVQDGPSGDDKSSHPQKGGYDHNYAVPVHLPN 1027


>07_03_0361 + 17215312-17216217
          Length = 301

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 85  PDGSIRHVDYHGDHHSGLVSCNFNSSVK 112
           PD     V Y+GDHHS +V  +  + V+
Sbjct: 169 PDQLAGDVLYYGDHHSAVVQLHSRADVE 196


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.135    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,182,039
Number of Sequences: 37544
Number of extensions: 113448
Number of successful extensions: 243
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 235
Number of HSP's gapped (non-prelim): 8
length of query: 114
length of database: 14,793,348
effective HSP length: 73
effective length of query: 41
effective length of database: 12,052,636
effective search space: 494158076
effective search space used: 494158076
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)