GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000434-TA|BGIBMGA000434-PA|IPR000618|Insect cuticle
protein
         (114 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006685-3|AAK84570.1|  163|Caenorhabditis elegans Hypothetical ...    27   2.4  
U23523-6|AAC46561.1|   86|Caenorhabditis elegans Hypothetical pr...    27   3.2  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    27   3.2  
AL032630-5|CAA21569.2|  165|Caenorhabditis elegans Hypothetical ...    27   3.2  
Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr...    26   7.4  
U58760-9|AAK31465.1|  654|Caenorhabditis elegans Dishevelled rel...    26   7.4  
U56963-2|AAB38119.2|  326|Caenorhabditis elegans Neuropeptide-li...    25   9.8  
AF016430-1|AAB65370.1|  261|Caenorhabditis elegans Fk506-binding...    25   9.8  

>AC006685-3|AAK84570.1|  163|Caenorhabditis elegans Hypothetical
           protein T13G4.1 protein.
          Length = 163

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 72  DGDDVKGYYSLHQPDGSIRHVDYHGDHHSGLVSCNFNSSVKLY 114
           D D+V+G Y      G  R+  +H DH   +V C  +  +  Y
Sbjct: 15  DEDNVQGPYGAKHVLGWYRNGHFHDDHQFKIVDCAQHGELVTY 57


>U23523-6|AAC46561.1|   86|Caenorhabditis elegans Hypothetical
           protein F53A9.6 protein.
          Length = 86

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 68  HESRDGDDVKGYYSLHQPDGSIRHVDYHGDHHSGLVSCNFNS 109
           H   DG    G+   H    S  H  +HG HH G    ++ S
Sbjct: 36  HVHTDGGH-HGHMDTHHHHDSHHHGGHHGGHHGGHYESHYES 76


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 4/42 (9%)

Query: 60  HTGDHKSQHESRDGDDVKGYYSLHQPDGSIRHVDYHGDHHSG 101
           H G H + + +  G    G +  H P     H ++HGDHH G
Sbjct: 612 HHGHHGAGYGAHHGHH--GAHHHHAPHHE--HHEHHGDHHHG 649



 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/42 (30%), Positives = 15/42 (35%), Gaps = 1/42 (2%)

Query: 60  HTGDHKSQHESRDGDDVKGYYSLHQPDGSIRHVDYHGDHHSG 101
           H   H   HE   GD   G + +H       H   H  HH G
Sbjct: 632 HHAPHHEHHEHH-GDHHHGSHGVHHGHHGTHHSLAHHGHHGG 672


>AL032630-5|CAA21569.2|  165|Caenorhabditis elegans Hypothetical
           protein Y62H9A.5 protein.
          Length = 165

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 63  DHKSQHESRDGDDVKGYYSLHQPDGSIRHVDYHGDHHSGLVSCNFNSSVKLY 114
           D  S+   RD   +K  +  +  D  IR+  + GD+++  +SC   S  K Y
Sbjct: 46  DSDSREHRRDFRKLKDLHKTNVVDARIRYYKHRGDYYAE-ISCPRQSDNKKY 96


>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical protein
            H06O01.2 protein.
          Length = 1461

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 6/43 (13%)

Query: 63   DHKSQHESRDGDDVKGYYSLHQPDGSIR------HVDYHGDHH 99
            DHK +   +D +  +G   +   +G+ +      H D+H DHH
Sbjct: 1407 DHKERDREKDRERNRGERRMDHGEGTSKDHHREHHKDHHKDHH 1449


>U58760-9|AAK31465.1|  654|Caenorhabditis elegans Dishevelled
           related protein 2 protein.
          Length = 654

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/42 (30%), Positives = 17/42 (40%)

Query: 73  GDDVKGYYSLHQPDGSIRHVDYHGDHHSGLVSCNFNSSVKLY 114
           GD+   Y  L  PDG  ++   H    SG  S N      +Y
Sbjct: 561 GDECADYTQLRGPDGGYKYPQSHASSASGHSSNNLIFPPSMY 602


>U56963-2|AAB38119.2|  326|Caenorhabditis elegans Neuropeptide-like
           protein protein16 protein.
          Length = 326

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/47 (25%), Positives = 18/47 (38%)

Query: 53  EYKVSDPHTGDHKSQHESRDGDDVKGYYSLHQPDGSIRHVDYHGDHH 99
           E + SD H G  K   +   G   K     H+      HV++  + H
Sbjct: 147 EKRSSDSHHGHQKRSVDEHHGHQKKNAEDHHEHQKRSEHVEHQAEMH 193


>AF016430-1|AAB65370.1|  261|Caenorhabditis elegans Fk506-binding
          protein family protein3 protein.
          Length = 261

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 62 GDHKSQHESRDGDDVKGYYSLHQPDGSI 89
          GD K + +S  GD ++ +Y L   +G +
Sbjct: 37 GDSKCKIKSESGDQLEQFYKLSDKEGKV 64


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.135    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,465
Number of Sequences: 27539
Number of extensions: 91597
Number of successful extensions: 199
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 184
Number of HSP's gapped (non-prelim): 17
length of query: 114
length of database: 12,573,161
effective HSP length: 72
effective length of query: 42
effective length of database: 10,590,353
effective search space: 444794826
effective search space used: 444794826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)