GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000434-TA|BGIBMGA000434-PA|IPR000618|Insect cuticle
protein
         (114 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   4.8  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   4.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   4.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    20   6.3  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 14/38 (36%), Positives = 16/38 (42%)

Query: 77  KGYYSLHQPDGSIRHVDYHGDHHSGLVSCNFNSSVKLY 114
           K Y  L QPD +IR     GD      S    SS+  Y
Sbjct: 759 KIYIILFQPDKNIRRKVTMGDKSKKQGSSAGTSSITKY 796


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 3/36 (8%)

Query: 72  DGDDVKGYYSLHQPDGSIRHVDYHGD---HHSGLVS 104
           D ++V G Y L +PD  I       D    H GLVS
Sbjct: 87  DNEEVCGIYFLAEPDQKIEINFITFDIPCEHRGLVS 122


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 14/38 (36%), Positives = 16/38 (42%)

Query: 77  KGYYSLHQPDGSIRHVDYHGDHHSGLVSCNFNSSVKLY 114
           K Y  L QPD +IR     GD      S    SS+  Y
Sbjct: 849 KIYIILFQPDKNIRRKVTMGDKSKKQGSSAGTSSITKY 886


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 87  GSIRHVDYHGDHHS 100
           G + H+D H  HH+
Sbjct: 271 GGVYHLDNHHVHHA 284


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,121
Number of Sequences: 429
Number of extensions: 961
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 114
length of database: 140,377
effective HSP length: 50
effective length of query: 64
effective length of database: 118,927
effective search space:  7611328
effective search space used:  7611328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
S2: 39 (19.8 bits)