Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000433-TA|BGIBMGA000433-PA|IPR000618|Insect cuticle
protein, IPR006025|Peptidase M, neutral zinc metallopeptidases,
zinc-binding site
         (215 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    27   0.11 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    27   0.11 
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       27   0.11 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    24   0.80 
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   7.4  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 27.1 bits (57), Expect = 0.11
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 28  VSSQSIVLHTSHGHEHQGQAPAHHQ-ILTTQHFEHGGHYDLGHHE 71
           +++QS+  H   GH  Q Q P HHQ     QH  +GG      H+
Sbjct: 157 LTTQSMNNHHM-GHHMQEQHPQHHQPHHQQQHMMYGGQQGANMHQ 200



 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 200 REGHAKHVVPEHQHGH 215
           +E H +H  P HQ  H
Sbjct: 172 QEQHPQHHQPHHQQQH 187


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 27.1 bits (57), Expect = 0.11
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 28  VSSQSIVLHTSHGHEHQGQAPAHHQ-ILTTQHFEHGGHYDLGHHE 71
           +++QS+  H   GH  Q Q P HHQ     QH  +GG      H+
Sbjct: 159 LTTQSMNNHHM-GHHMQEQHPQHHQPHHQQQHMMYGGQQGANMHQ 202



 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 200 REGHAKHVVPEHQHGH 215
           +E H +H  P HQ  H
Sbjct: 174 QEQHPQHHQPHHQQQH 189


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 27.1 bits (57), Expect = 0.11
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 125 YKVEDPHTGDNKYQHETRDGDVVKGVYSLHEADGTIRTVKYAAD 168
           Y VE  +    + +  T DG +V     +   DG++R V+Y AD
Sbjct: 195 YVVEGRNYRKYRVEERTSDGFIVGEYGVVSHDDGSLRGVRYTAD 238


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 24.2 bits (50), Expect = 0.80
 Identities = 9/19 (47%), Positives = 10/19 (52%), Gaps = 1/19 (5%)

Query: 58  HFEHGGHY-DLGHHEVQHH 75
           H  H GH+    HH V HH
Sbjct: 322 HHHHAGHHIHAQHHVVNHH 340


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 165 YAADKHSGFNAEVHREG 181
           Y   KH+G N E++  G
Sbjct: 442 YCPPKHTGKNCEIYDRG 458


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.133    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,050
Number of Sequences: 317
Number of extensions: 1718
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 215
length of database: 114,650
effective HSP length: 54
effective length of query: 161
effective length of database: 97,532
effective search space: 15702652
effective search space used: 15702652
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)