Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000433-TA|BGIBMGA000433-PA|IPR000618|Insect cuticle
protein, IPR006025|Peptidase M, neutral zinc metallopeptidases,
zinc-binding site
         (215 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    27   1.6  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    26   3.7  
SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr 1|||...    26   4.8  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    25   8.5  

>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 22  HGHGHAVSSQSIVLHT-SHGHEHQGQAPAHHQILTTQHFEHGGHYDLGHHEVQHHG 76
           H H H  S +    H  +H H H+      H+ ++ Q+ ++  H    H     HG
Sbjct: 530 HEHTHENSQEHHHEHNHNHDHIHKYNEKCDHESISLQNLDNDHHCHHHHENHNMHG 585


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 22  HGHGHAVSSQSIVLHTSHGHEHQGQAPAHHQILTTQHF 59
           HGH  ++S +S+V +    H+   +   HH  L  + F
Sbjct: 229 HGHSGSLSLKSLVPNHHDKHDKHDKHEKHHSSLDLRRF 266


>SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/54 (24%), Positives = 24/54 (44%)

Query: 134 DNKYQHETRDGDVVKGVYSLHEADGTIRTVKYAADKHSGFNAEVHREGHITNDI 187
           D+ Y + T D ++V+G   L   DG ++   +     S  +  + R   I  D+
Sbjct: 121 DSPYGNSTTDAEIVEGPSDLSRQDGLLKEHDFLGRAESQVDEFLERGRMILGDL 174


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 45  GQAPAHHQILTTQHFEHGGHYDLGHHEVQHHGY 77
           G    H+   + +   H GH+   HH   HH +
Sbjct: 280 GSTNHHNNHESDKDLHHEGHHHHHHHHHHHHSH 312


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.133    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 863,572
Number of Sequences: 5004
Number of extensions: 29853
Number of successful extensions: 42
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 9
length of query: 215
length of database: 2,362,478
effective HSP length: 70
effective length of query: 145
effective length of database: 2,012,198
effective search space: 291768710
effective search space used: 291768710
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)