Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000433-TA|BGIBMGA000433-PA|IPR000618|Insect cuticle
protein, IPR006025|Peptidase M, neutral zinc metallopeptidases,
zinc-binding site
         (215 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    29   0.033
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.54 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.72 
AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced prot...    24   1.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.7  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 29.1 bits (62), Expect = 0.033
 Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 9/55 (16%)

Query: 21  GHGHGHAVSSQSIVLHTSHGHEHQGQAPAHHQILT-TQHFEHGGHYDLGHHEVQH 74
           GHGH H        +H +  H H   A  HHQ  T   H  +     +GH    H
Sbjct: 420 GHGHSH--------IHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHHH 466


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 12/38 (31%), Positives = 16/38 (42%)

Query: 36  HTSHGHEHQGQAPAHHQILTTQHFEHGGHYDLGHHEVQ 73
           H S  H H+G +P H     T     G  +   HH+ Q
Sbjct: 322 HPSQYHPHRGSSPHHQHGNHTMGPTMGPPHHHHHHQTQ 359


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 153 LHEADGTIRTVKYAADKHSGFNAEVH 178
           L E DGT    +   DK SGF+  VH
Sbjct: 57  LAEFDGTTVLCRVCGDKASGFHYGVH 82


>AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 30

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 155 EADGTIRTVKYAADKHSGFNAEVH 178
           E DGT    +   DK SGF+  VH
Sbjct: 1   EFDGTTVLCRVCGDKASGFHYGVH 24


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/32 (25%), Positives = 17/32 (53%)

Query: 19   QDGHGHGHAVSSQSIVLHTSHGHEHQGQAPAH 50
            + GH  G +++  ++   T+HG+  + Q   H
Sbjct: 1425 KSGHNGGASLTGYTLHYRTAHGNLDELQLSRH 1456


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/32 (25%), Positives = 17/32 (53%)

Query: 19   QDGHGHGHAVSSQSIVLHTSHGHEHQGQAPAH 50
            + GH  G +++  ++   T+HG+  + Q   H
Sbjct: 1421 KSGHNGGASLTGYTLHYRTAHGNLDELQLSRH 1452


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.133    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,461
Number of Sequences: 429
Number of extensions: 1710
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 6
length of query: 215
length of database: 140,377
effective HSP length: 55
effective length of query: 160
effective length of database: 116,782
effective search space: 18685120
effective search space used: 18685120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)