Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000432-TA|BGIBMGA000432-PA|IPR000618|Insect cuticle
protein
         (59 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       29   0.005
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    19   3.0  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    19   3.0  
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    19   3.9  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    19   3.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    19   3.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    19   3.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    19   3.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    19   3.9  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    19   3.9  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    19   5.2  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    19   5.2  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    19   5.2  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    18   6.8  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    18   6.8  
DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory pro...    18   9.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    18   9.0  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     18   9.0  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    18   9.0  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 28.7 bits (61), Expect = 0.005
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 12  YKVEDHHTKDHKSQHETRDGDAVKGYYALHEPDGSERYIHYHGD 55
           Y VE  + + ++ +  T DG  V  Y  +   DGS R + Y  D
Sbjct: 195 YVVEGRNYRKYRVEERTSDGFIVGEYGVVSHDDGSLRGVRYTAD 238


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 19.4 bits (38), Expect = 3.0
 Identities = 6/22 (27%), Positives = 10/22 (45%)

Query: 5   HPKYEFEYKVEDHHTKDHKSQH 26
           H  +  + +   HH   H+ QH
Sbjct: 166 HMGHHMQEQHPQHHQPHHQQQH 187


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 19.4 bits (38), Expect = 3.0
 Identities = 6/22 (27%), Positives = 10/22 (45%)

Query: 5   HPKYEFEYKVEDHHTKDHKSQH 26
           H  +  + +   HH   H+ QH
Sbjct: 168 HMGHHMQEQHPQHHQPHHQQQH 189


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
          protein.
          Length = 74

 Score = 19.0 bits (37), Expect = 3.9
 Identities = 6/11 (54%), Positives = 6/11 (54%)

Query: 16 DHHTKDHKSQH 26
          DHH K H   H
Sbjct: 22 DHHLKTHMRLH 32


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 19.0 bits (37), Expect = 3.9
 Identities = 5/17 (29%), Positives = 12/17 (70%)

Query: 2   FKTHPKYEFEYKVEDHH 18
           F+TH  ++  +++ DH+
Sbjct: 611 FETHIFFDDAFEISDHN 627


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 19.0 bits (37), Expect = 3.9
 Identities = 5/17 (29%), Positives = 12/17 (70%)

Query: 2   FKTHPKYEFEYKVEDHH 18
           F+TH  ++  +++ DH+
Sbjct: 611 FETHIFFDDAFEISDHN 627


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 19.0 bits (37), Expect = 3.9
 Identities = 5/17 (29%), Positives = 12/17 (70%)

Query: 2   FKTHPKYEFEYKVEDHH 18
           F+TH  ++  +++ DH+
Sbjct: 611 FETHIFFDDAFEISDHN 627


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 19.0 bits (37), Expect = 3.9
 Identities = 5/17 (29%), Positives = 12/17 (70%)

Query: 2   FKTHPKYEFEYKVEDHH 18
           F+TH  ++  +++ DH+
Sbjct: 611 FETHIFFDDAFEISDHN 627


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 19.0 bits (37), Expect = 3.9
 Identities = 7/26 (26%), Positives = 15/26 (57%)

Query: 23  KSQHETRDGDAVKGYYALHEPDGSER 48
           ++QHE ++GD+      + +  G+ R
Sbjct: 609 RAQHEFKNGDSSSLLDKMRDSSGAGR 634


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 19.0 bits (37), Expect = 3.9
 Identities = 6/11 (54%), Positives = 6/11 (54%)

Query: 16  DHHTKDHKSQH 26
           DHH K H   H
Sbjct: 175 DHHLKTHMRLH 185


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 18.6 bits (36), Expect = 5.2
 Identities = 5/17 (29%), Positives = 10/17 (58%)

Query: 11  EYKVEDHHTKDHKSQHE 27
           EY+ +  HT+ H   ++
Sbjct: 293 EYRTDRKHTQQHYQMNQ 309


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 18.6 bits (36), Expect = 5.2
 Identities = 5/17 (29%), Positives = 10/17 (58%)

Query: 11  EYKVEDHHTKDHKSQHE 27
           EY+ +  HT+ H   ++
Sbjct: 241 EYRTDRKHTQQHYQMNQ 257


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 18.6 bits (36), Expect = 5.2
 Identities = 5/17 (29%), Positives = 10/17 (58%)

Query: 11  EYKVEDHHTKDHKSQHE 27
           EY+ +  HT+ H   ++
Sbjct: 424 EYRTDRKHTQQHYQMNQ 440


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 18.2 bits (35), Expect = 6.8
 Identities = 5/11 (45%), Positives = 9/11 (81%)

Query: 44  DGSERYIHYHG 54
           +G+E  +H+HG
Sbjct: 193 EGNEVTLHWHG 203


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 18.2 bits (35), Expect = 6.8
 Identities = 5/11 (45%), Positives = 9/11 (81%)

Query: 44  DGSERYIHYHG 54
           +G+E  +H+HG
Sbjct: 193 EGNEVTLHWHG 203


>DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory
           protein 4 protein.
          Length = 133

 Score = 17.8 bits (34), Expect = 9.0
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 32  DAVKGYYALHEPDGSERYIHYHGDK 56
           D  K   A ++PDG+ +  ++   K
Sbjct: 101 DYWKALEAKYDPDGTYKKRYFESQK 125


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 17.8 bits (34), Expect = 9.0
 Identities = 7/24 (29%), Positives = 12/24 (50%)

Query: 10  FEYKVEDHHTKDHKSQHETRDGDA 33
           F++  E     DH +   +R GD+
Sbjct: 365 FDFHREREPVADHHANLYSRPGDS 388


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 17.8 bits (34), Expect = 9.0
 Identities = 6/18 (33%), Positives = 8/18 (44%)

Query: 5   HPKYEFEYKVEDHHTKDH 22
           HP   F Y    H++  H
Sbjct: 158 HPGMTFRYHFNVHNSGTH 175


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 17.8 bits (34), Expect = 9.0
 Identities = 6/12 (50%), Positives = 8/12 (66%)

Query: 3   KTHPKYEFEYKV 14
           KTHPK + +  V
Sbjct: 90  KTHPKVKLQVAV 101


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.134    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,661
Number of Sequences: 317
Number of extensions: 639
Number of successful extensions: 19
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of query: 59
length of database: 114,650
effective HSP length: 39
effective length of query: 20
effective length of database: 102,287
effective search space:  2045740
effective search space used:  2045740
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.3 bits)
S2: 34 (17.8 bits)