Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000432-TA|BGIBMGA000432-PA|IPR000618|Insect cuticle
protein
         (59 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.12c |mug98||sequence orphan|Schizosaccharomyces pombe|c...    24   2.8  
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    24   2.8  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    24   2.8  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    23   3.6  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    23   6.4  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    23   6.4  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    22   8.4  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    22   8.4  
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        22   8.4  

>SPBC15D4.12c |mug98||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 113

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 6   PKYEFEYKVEDHHTKDHKSQHETRDGD-AVKGYYALHEPDGSERYIHY 52
           P Y  E K+   ++  ++   +  +G      YY  H P+G+  +++Y
Sbjct: 66  PLYNVEAKINHSYSAFYRPFTKRENGLWYANPYYMQHGPNGNYHHVYY 113


>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 10/39 (25%), Positives = 20/39 (51%)

Query: 18  HTKDHKSQHETRDGDAVKGYYALHEPDGSERYIHYHGDK 56
           +T +H + H  R+  +  G+Y   +P   E+ +   G+K
Sbjct: 138 NTFEHSAYHSNREEISSSGFYYHRKPQLFEKSLEKLGNK 176


>SPCPB16A4.05c |||urease accessory protein UREG
          |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 286

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 7/29 (24%), Positives = 15/29 (51%)

Query: 5  HPKYEFEYKVEDHHTKDHKSQHETRDGDA 33
          H  +++++   DHH  DH S   + +  +
Sbjct: 17 HHTHDYDHHNHDHHGHDHHSHDSSSNSSS 45


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 23  KSQHETRDGDAVKGYYALHEPDGSERYIHYHGDKHS 58
           KS    R  D ++G   LH P+ +   I++    HS
Sbjct: 245 KSHWRERIWDLIQGMVTLHIPEQAAWTIYFEWQDHS 280


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 10  FEYKVEDHHTKDHKSQHETRDGDAVKGYYALHEPDGSERYIHYHGDKHSG 59
           FE+ +  +  K H +  E         Y  +HEP   E ++H    + SG
Sbjct: 409 FEHLLRPYMEKYHMTLEEFTHA---YNYQQIHEPALDEYFVHDRAVRESG 455


>SPCC63.03 |||DNAJ domain protein, DNAJC11
          family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 11/37 (29%), Positives = 16/37 (43%)

Query: 16 DHHTKDHKSQHETRDGDAVKGYYALHEPDGSERYIHY 52
          D HT D K+  E +       Y  L +P   E Y ++
Sbjct: 38 DRHTADQKAAAEEKFQIIQHAYEVLSDPSKKEIYDNF 74


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 22.2 bits (45), Expect = 8.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 12  YKVEDHHTKDHKSQHETR 29
           +KVED+  K+HK   + R
Sbjct: 410 HKVEDYLRKNHKGSKDAR 427


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 22.2 bits (45), Expect = 8.4
 Identities = 8/25 (32%), Positives = 16/25 (64%)

Query: 23  KSQHETRDGDAVKGYYALHEPDGSE 47
           K+  ++  GD++ G Y++ E  G+E
Sbjct: 395 KAIRDSMVGDSIHGLYSILETSGAE 419


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 22.2 bits (45), Expect = 8.4
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 18  HTKDHKSQHETRDGDAVKGY 37
           H   H  Q +  DGD V GY
Sbjct: 210 HYSGHGGQTKDLDGDEVDGY 229


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.134    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 334,893
Number of Sequences: 5004
Number of extensions: 10959
Number of successful extensions: 22
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 9
length of query: 59
length of database: 2,362,478
effective HSP length: 40
effective length of query: 19
effective length of database: 2,162,318
effective search space: 41084042
effective search space used: 41084042
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 45 (22.2 bits)