Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000432-TA|BGIBMGA000432-PA|IPR000618|Insect cuticle
protein
         (59 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr...    27   1.6  
U80445-9|AAB37799.1|  264|Caenorhabditis elegans Fk506-binding p...    26   3.6  
U80445-8|AAK68259.1|  300|Caenorhabditis elegans Fk506-binding p...    26   3.6  
AL021493-5|CAA16391.2|  188|Caenorhabditis elegans Hypothetical ...    25   4.8  
U58760-9|AAK31465.1|  654|Caenorhabditis elegans Dishevelled rel...    25   8.4  

>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical
           protein F42C5.10 protein.
          Length = 1292

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 22  HKSQHETRDGDAVKGYYALH-EPDGSERYIHYHGDKHS 58
           H  +H   D   V+ ++  H   DGSE   HYH D+++
Sbjct: 933 HDQEHHHYDTVHVQHHHHHHYHTDGSEHVHHYHQDENA 970


>U80445-9|AAB37799.1|  264|Caenorhabditis elegans Fk506-binding
           protein family protein5, isoform a protein.
          Length = 264

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 14  VEDHHTKDHKSQHETRDGDAVKGYYALHEPDGS 46
           +E  H  D     +++ GD +   Y LH  DG+
Sbjct: 154 IEQTHKIDEDKCKKSKSGDTIHQQYVLHLEDGT 186



 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 20 KDHKSQHETRDGDAVKGYYALHEPDGSE 47
          K  K   +++DGD +  +Y L + DG E
Sbjct: 39 KAEKCPIKSQDGDVLDQWYKLSDKDGKE 66


>U80445-8|AAK68259.1|  300|Caenorhabditis elegans Fk506-binding
           protein family protein5, isoform b protein.
          Length = 300

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 14  VEDHHTKDHKSQHETRDGDAVKGYYALHEPDGS 46
           +E  H  D     +++ GD +   Y LH  DG+
Sbjct: 190 IEQTHKIDEDKCKKSKSGDTIHQQYVLHLEDGT 222



 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 20  KDHKSQHETRDGDAVKGYYALHEPDGSE 47
           K  K   +++DGD +  +Y L + DG E
Sbjct: 75  KAEKCPIKSQDGDVLDQWYKLSDKDGKE 102


>AL021493-5|CAA16391.2|  188|Caenorhabditis elegans Hypothetical
          protein Y51A2B.5 protein.
          Length = 188

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 7/21 (33%), Positives = 15/21 (71%)

Query: 39 ALHEPDGSERYIHYHGDKHSG 59
          ++H+P  + RY ++HG+  +G
Sbjct: 59 SIHKPGKNYRYFYFHGNDQAG 79


>U58760-9|AAK31465.1|  654|Caenorhabditis elegans Dishevelled
           related protein 2 protein.
          Length = 654

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/29 (37%), Positives = 12/29 (41%)

Query: 31  GDAVKGYYALHEPDGSERYIHYHGDKHSG 59
           GD    Y  L  PDG  +Y   H    SG
Sbjct: 561 GDECADYTQLRGPDGGYKYPQSHASSASG 589


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.314    0.134    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,836,112
Number of Sequences: 27539
Number of extensions: 62357
Number of successful extensions: 99
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 93
Number of HSP's gapped (non-prelim): 7
length of query: 59
length of database: 12,573,161
effective HSP length: 40
effective length of query: 19
effective length of database: 11,471,601
effective search space: 217960419
effective search space used: 217960419
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)