GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000431-TA|BGIBMGA000431-PA|IPR000618|Insect cuticle
protein
         (59 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    28   0.90 
U97192-1|AAB52434.2|  986|Caenorhabditis elegans Hypothetical pr...    27   2.1  
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr...    26   2.7  
AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical...    26   2.7  
U80445-9|AAB37799.1|  264|Caenorhabditis elegans Fk506-binding p...    26   3.6  
U80445-8|AAK68259.1|  300|Caenorhabditis elegans Fk506-binding p...    26   3.6  
Z99942-7|CAB17070.2|  462|Caenorhabditis elegans Hypothetical pr...    25   4.8  
Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr...    25   4.8  
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ...    25   4.8  
AF039716-7|AAB96735.3|  617|Caenorhabditis elegans Sodium:neurot...    25   8.4  
AC006642-9|AAX88828.1|  339|Caenorhabditis elegans Laterally sym...    25   8.4  
AC006642-8|AAF39827.2|  365|Caenorhabditis elegans Laterally sym...    25   8.4  

>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 17  HHTKDHKSQHETR-DGDAVKGYYALHEPDGSERHVHYHGDKHS 58
           HH+  H   H    +  A  G +  H  D    H H H  KHS
Sbjct: 680 HHSPAHHGHHGAHHEHGAHHGAHHGHHDDKENHHHHGHHSKHS 722



 Score = 26.6 bits (56), Expect = 2.1
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 5/52 (9%)

Query: 11  EYKVEDHHTKDHKSQHETRDG---DAVKGYYALHEPDGSERHVH--YHGDKH 57
           E + E  H   H   HE +DG   +  +G +  H     E  VH  +HG+ H
Sbjct: 359 ESEDEKKHAPAHHEHHEHKDGAHHEHKEGEHHEHAAHHDEHGVHHRHHGEHH 410



 Score = 26.6 bits (56), Expect = 2.1
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 17  HHTKDHKSQHETRDGDAVKGYYALHEPDGSERHVH-YHGDKHSG 59
           HH+  H  +H T  G   + ++A       E H H +H   H G
Sbjct: 413 HHSPAHHGEHGTHHGHHGEHHHAPAHHGHHESHGHGHHSPAHHG 456



 Score = 25.8 bits (54), Expect = 3.6
 Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 9/62 (14%)

Query: 5   HPKYEFEYKVEDHHTKDHKSQHETRDGDAVKGYYALHEPDGSERHV-------HYHGDKH 57
           H  +   +    HH   H  +H    G    GY A H   G+  H         +HGD H
Sbjct: 590 HESHGHGHHAPAHH--GHHGEHGVHHGHHGAGYGAHHGHHGAHHHHAPHHEHHEHHGDHH 647

Query: 58  SG 59
            G
Sbjct: 648 HG 649



 Score = 25.8 bits (54), Expect = 3.6
 Identities = 13/43 (30%), Positives = 15/43 (34%), Gaps = 1/43 (2%)

Query: 17  HHTKDHKSQHETRDGDAVKGYYALHEPDGSERHVHYHGDKHSG 59
           HH   H   HE   GD   G + +H       H   H   H G
Sbjct: 631 HHHAPHHEHHE-HHGDHHHGSHGVHHGHHGTHHSLAHHGHHGG 672



 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 17  HHTKDHKSQH-ETRDGDAVKGYYALHEPDGSERHVHYHGDKHSG 59
           HH+  H   H E     A  G++  H         H+H   H G
Sbjct: 497 HHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGEHHHAPAHHG 540


>U97192-1|AAB52434.2|  986|Caenorhabditis elegans Hypothetical
           protein C01F4.2a protein.
          Length = 986

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 26  HETRDGDAVKGYYALHEPDGSERHVHYHGDKHS 58
           HE+  G  +  + A  E D S RH H HGD HS
Sbjct: 753 HESHPGVLLSPFPATLEEDSSPRH-HRHGD-HS 783


>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical
           protein F42C5.10 protein.
          Length = 1292

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 22  HKSQHETRDGDAVKGYYALH-EPDGSERHVHYHGDKHS 58
           H  +H   D   V+ ++  H   DGSE   HYH D+++
Sbjct: 933 HDQEHHHYDTVHVQHHHHHHYHTDGSEHVHHYHQDENA 970


>AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical
           protein K04F10.7 protein.
          Length = 293

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 8/41 (19%)

Query: 11  EYKVEDHHTKDHKSQHETRDGDAVKGYYALHEPDGSERHVH 51
           +++   HH +DHK  H   D          H  D + RH H
Sbjct: 139 QHRPTSHHHRDHKDHHRRDDKH--------HHRDSNHRHAH 171


>U80445-9|AAB37799.1|  264|Caenorhabditis elegans Fk506-binding
           protein family protein5, isoform a protein.
          Length = 264

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 14  VEDHHTKDHKSQHETRDGDAVKGYYALHEPDGS 46
           +E  H  D     +++ GD +   Y LH  DG+
Sbjct: 154 IEQTHKIDEDKCKKSKSGDTIHQQYVLHLEDGT 186



 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 20 KDHKSQHETRDGDAVKGYYALHEPDGSE 47
          K  K   +++DGD +  +Y L + DG E
Sbjct: 39 KAEKCPIKSQDGDVLDQWYKLSDKDGKE 66


>U80445-8|AAK68259.1|  300|Caenorhabditis elegans Fk506-binding
           protein family protein5, isoform b protein.
          Length = 300

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 14  VEDHHTKDHKSQHETRDGDAVKGYYALHEPDGS 46
           +E  H  D     +++ GD +   Y LH  DG+
Sbjct: 190 IEQTHKIDEDKCKKSKSGDTIHQQYVLHLEDGT 222



 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 20  KDHKSQHETRDGDAVKGYYALHEPDGSE 47
           K  K   +++DGD +  +Y L + DG E
Sbjct: 75  KAEKCPIKSQDGDVLDQWYKLSDKDGKE 102


>Z99942-7|CAB17070.2|  462|Caenorhabditis elegans Hypothetical
           protein H13N06.5 protein.
          Length = 462

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 16/45 (35%), Positives = 17/45 (37%), Gaps = 3/45 (6%)

Query: 16  DH-HTKDHKSQHETRDGDAVKGYYALHEPDGSERHVHYHGDKHSG 59
           DH H  DH   H    G A   +   H  D  E H H H   H G
Sbjct: 77  DHGHAHDHDHGHAHDHGHAHDHHG--HSHDEEEDHHHGHAHDHHG 119



 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/40 (32%), Positives = 15/40 (37%), Gaps = 1/40 (2%)

Query: 16  DH-HTKDHKSQHETRDGDAVKGYYALHEPDGSERHVHYHG 54
           DH H  DH       + D   G+   H     E H H HG
Sbjct: 91  DHGHAHDHHGHSHDEEEDHHHGHAHDHHGHSHEDHGHSHG 130


>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical protein
            H06O01.2 protein.
          Length = 1461

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 20   KDHKSQHETRDGDAVKGYYALHEPDGS--ERHVHYHGDKH 57
            KDHK +   +D +  +G   +   +G+  + H  +H D H
Sbjct: 1406 KDHKERDREKDRERNRGERRMDHGEGTSKDHHREHHKDHH 1445


>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
           protein Y47D3B.7 protein.
          Length = 1113

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 9/36 (25%), Positives = 15/36 (41%)

Query: 18  HTKDHKSQHETRDGDAVKGYYALHEPDGSERHVHYH 53
           H   + S ++   G +   YY+ H       H H+H
Sbjct: 200 HINGYMSPYDQAQGPSGPSYYSQHHQSPPPHHHHHH 235


>AF039716-7|AAB96735.3|  617|Caenorhabditis elegans
           Sodium:neurotransmitter symporterfamily protein 1
           protein.
          Length = 617

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 10  FEYKVEDHHTKDHKSQHETRDGDAVKGYYALHEPDGSERHVH 51
           F  ++++HH +D K+Q   R      GY  L +   +E  ++
Sbjct: 575 FAARLQNHHHRDEKAQPIPRYTSNAPGYLLLPQAPLAEPEIY 616


>AC006642-9|AAX88828.1|  339|Caenorhabditis elegans Laterally
           symmetric (defectivein lateral asymmetry) protein 2,
           isoform b protein.
          Length = 339

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 17  HHTKDHKSQHETRDGDAVKGYYALHEPDGSERHVHYH 53
           HHT +H++  E  +    K Y    +     +H+ YH
Sbjct: 256 HHTLEHENHREGLEFFCEKCYRPFADEASYNQHMSYH 292


>AC006642-8|AAF39827.2|  365|Caenorhabditis elegans Laterally
           symmetric (defectivein lateral asymmetry) protein 2,
           isoform a protein.
          Length = 365

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 17  HHTKDHKSQHETRDGDAVKGYYALHEPDGSERHVHYH 53
           HHT +H++  E  +    K Y    +     +H+ YH
Sbjct: 282 HHTLEHENHREGLEFFCEKCYRPFADEASYNQHMSYH 318


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.312    0.133    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,845,222
Number of Sequences: 27539
Number of extensions: 62626
Number of successful extensions: 109
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 88
Number of HSP's gapped (non-prelim): 25
length of query: 59
length of database: 12,573,161
effective HSP length: 40
effective length of query: 19
effective length of database: 11,471,601
effective search space: 217960419
effective search space used: 217960419
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 51 (24.6 bits)