GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000431-TA|BGIBMGA000431-PA|IPR000618|Insect cuticle
protein
         (59 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    19   3.6  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    19   3.6  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    19   4.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                19   6.2  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 19.4 bits (38), Expect = 3.6
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 16  DHHTKDHKSQHETRDGDAVKGYYALHEPDGSERHVHYHGDKHS 58
           +H  K H+  H    G+ V      HE  GS++ +  H   HS
Sbjct: 244 NHVLKLHQVAHY---GEKVYKCTLCHETFGSKKTMELHIKTHS 283


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 19.4 bits (38), Expect = 3.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 30  DGDAVKGYYALHEPD 44
           D + V G Y L EPD
Sbjct: 87  DNEEVCGIYFLAEPD 101


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
          protein.
          Length = 74

 Score = 19.0 bits (37), Expect = 4.7
 Identities = 6/11 (54%), Positives = 6/11 (54%)

Query: 16 DHHTKDHKSQH 26
          DHH K H   H
Sbjct: 22 DHHLKTHMRLH 32


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 18.6 bits (36), Expect = 6.2
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 24  SQHETRDGDAVKGYYALHEP 43
           SQH  + G  V+  Y  H P
Sbjct: 196 SQHPQQHGLGVQNGYGRHLP 215


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.133    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,626
Number of Sequences: 429
Number of extensions: 713
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 59
length of database: 140,377
effective HSP length: 39
effective length of query: 20
effective length of database: 123,646
effective search space:  2472920
effective search space used:  2472920
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.7 bits)
S2: 35 (18.2 bits)