GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000430-TA|BGIBMGA000430-PA|IPR000618|Insect cuticle
protein
         (222 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0602 + 19183549-19184919                                         32   0.43 
01_06_0666 + 31040768-31041079,31041716-31041889,31041996-31042646     31   0.99 
06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047     29   3.0  
06_01_0025 - 244068-244177,244279-244333,244500-244527,244621-24...    29   3.0  
03_02_0213 + 6480521-6480644,6482347-6482499,6482582-6482980,648...    28   7.0  

>08_02_0602 + 19183549-19184919
          Length = 456

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 6/74 (8%)

Query: 97  ATNYIAAAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEE---YAHPKYDFAYSVADG 153
           A+  +AAA P   A  +  A     V +    +L+SA HE     YA+ + D A   ADG
Sbjct: 198 ASGSVAAALP---AGVLDDACADLDVTSSNQPLLLSAEHEVVDALYANQEADAAILHADG 254

Query: 154 HSGDNKSQHESRDG 167
           H   ++SQ E   G
Sbjct: 255 HHNQDESQREHHHG 268


>01_06_0666 + 31040768-31041079,31041716-31041889,31041996-31042646
          Length = 378

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 85  SSQTILRHDQPHATNYIAAAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPK 143
           SS+  +RH + H+++ +  A P+  A P+  ++P++    P   +  S HHE +  H K
Sbjct: 209 SSRIAIRHSRDHSSDCLTPA-PMPPA-PLSCSSPISIKQPPRLSIQRSQHHERDTRHAK 265


>06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047
          Length = 396

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 6/108 (5%)

Query: 92  HDQPHATNYIAAAAPVHYASPVHYAAPVAKVIAPAHKVL---VSAHHEEEYAH-PKYDFA 147
           H +  +  ++AAAA   YASP       A   A A +V+         + + H    D +
Sbjct: 188 HHRKPSPPFVAAAAAAAYASPDQMECTSAAAAAAAKRVVREDCKPKVSKRFVHADPSDLS 247

Query: 148 YSVADGHSGDNKSQHESRDGDAVHGEY--TLVEADGSVRKVEYTADDH 193
             V DG+      Q  ++D       +  +   A    +KV+ +ADD+
Sbjct: 248 LVVKDGYQWRKYGQKVTKDNPCPRAYFRCSFAPACPVKKKVQRSADDN 295


>06_01_0025 -
           244068-244177,244279-244333,244500-244527,244621-244691,
           244829-244926,245069-245186,245573-245636,245744-245808,
           245893-245928,246255-246311,246422-246691
          Length = 323

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/53 (33%), Positives = 22/53 (41%)

Query: 101 IAAAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADG 153
           +AAA P  YA  +  AAP A +  P      S     EY H  Y F   +  G
Sbjct: 43  LAAAHPYGYAPWLANAAPAALLRRPVSTTFYSFDLLREYPHDPYAFTQGLLYG 95


>03_02_0213 +
           6480521-6480644,6482347-6482499,6482582-6482980,
           6483158-6483234,6483990-6485312
          Length = 691

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 145 DFAYSVADGHSGDNKSQHESRDGDAVHGEYTLVEADGSVRK--VEYTADDHHGF-NAI 199
           ++A S  DG  G  KSQ + RD D   GE    +   + +K  V ++ + H  F NA+
Sbjct: 162 EYASSANDGAEGSWKSQKKKRDKDDDDGELESGDPSSTSKKPRVVWSVELHQQFVNAV 219


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.128    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,777,285
Number of Sequences: 37544
Number of extensions: 177553
Number of successful extensions: 457
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 456
Number of HSP's gapped (non-prelim): 5
length of query: 222
length of database: 14,793,348
effective HSP length: 79
effective length of query: 143
effective length of database: 11,827,372
effective search space: 1691314196
effective search space used: 1691314196
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)