GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000430-TA|BGIBMGA000430-PA|IPR000618|Insect cuticle
protein
         (222 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)          31   0.76 
SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_32767| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_31903| Best HMM Match : Amino_oxidase (HMM E-Value=3.36312e-44)     28   5.4  
SB_26858| Best HMM Match : ANF_receptor (HMM E-Value=2.4e-15)          27   9.4  

>SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)
          Length = 1214

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 115  YAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADGHSGDNKSQHES-RDGDAVHGE 173
            YA P A+       V  S H  EE    K  F++S+    S     +++  + G+ +   
Sbjct: 981  YAGPSAQNNRGNASVASSGHLPEEIVTGKKKFSFSIEVNFSPAQSEENDGPKYGEGIEDR 1040

Query: 174  YTLVEADGSVRKVEYTADDHHGFNAIVSN 202
            Y  V     +  V YTAD++  F + +S+
Sbjct: 1041 YDRVHL-SPIPSVGYTADENTSFVSDLSD 1068


>SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2250

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 145  DFAYSVADGHSGDNKSQHESRDGDAV--HGEYTLVEADGSVRKVEYTAD 191
            D  +   +   GD+  +H+  DGD+V  H +Y     D  VR  +Y  D
Sbjct: 1863 DVRHDEYNDEDGDSDVRHDDYDGDSVVRHDDYNDDNGDSDVRHDDYDGD 1911


>SB_32767| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1259

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/51 (29%), Positives = 21/51 (41%)

Query: 95  PHATNYIAAAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYD 145
           PHA  + A     HYA P + AAP +++     K     +       P YD
Sbjct: 622 PHAQVFFAGRGVHHYAIPQYTAAPSSEIAKIVKKEPTECNETSSVWRPWYD 672


>SB_31903| Best HMM Match : Amino_oxidase (HMM E-Value=3.36312e-44)
          Length = 1021

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 134 HHEEEYAHPKYDFAYSVADGHSGDNKSQHESRDGDAVHGEYTLVEADGSVRKVEYTADDH 193
           H + +  H K +  +   D   G    +HE  +GD  HG+  +   +G +++ + + +  
Sbjct: 333 HEKGDMQHGKKNMGHEKGDMQHGKKNMEHE--EGDMQHGKKNMGHEEGDMQQGKKSMEHE 390

Query: 194 HG 195
            G
Sbjct: 391 KG 392



 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 134 HHEEEYAHPKYDFAYSVADGHSGDNKSQHESRDGDAVHGEYTLVEADGSVR 184
           H E +  H K +  +   D   G    +HE   GD  HG+  +   +G ++
Sbjct: 361 HEEGDMQHGKKNMGHEEGDMQQGKKSMEHEK--GDMQHGKKNMGHEEGDMQ 409


>SB_26858| Best HMM Match : ANF_receptor (HMM E-Value=2.4e-15)
          Length = 846

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 139 YAHPKYDFAYSVADGHSGDNKSQHESRDGD-AVHGEYT 175
           Y    YD  Y+VA   SG  ++ H +R  D +V GEY+
Sbjct: 681 YTAQVYDAVYAVAHATSGLYRNGHVTRGNDWSVVGEYS 718


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.128    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,185,466
Number of Sequences: 59808
Number of extensions: 183643
Number of successful extensions: 406
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 398
Number of HSP's gapped (non-prelim): 12
length of query: 222
length of database: 16,821,457
effective HSP length: 79
effective length of query: 143
effective length of database: 12,096,625
effective search space: 1729817375
effective search space used: 1729817375
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)