Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000429-TA|BGIBMGA000429-PA|IPR000618|Insect cuticle
protein
         (426 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.1  
SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)          30   4.1  
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)                   29   5.4  
SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1)                      29   7.2  
SB_32767| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.2  
SB_18731| Best HMM Match : DUF1309 (HMM E-Value=2)                     29   7.2  

>SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2250

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 145  DFTYSVADGHSGDNKSQHESRDGDAV--HGEYTLLEADGSVRKVEYTAD 191
            D  +   +   GD+  +H+  DGD+V  H +Y     D  VR  +Y  D
Sbjct: 1863 DVRHDEYNDEDGDSDVRHDDYDGDSVVRHDDYNDDNGDSDVRHDDYDGD 1911



 Score = 29.9 bits (64), Expect = 4.1
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 349  DFAYSVADGHSGDNKSQHESRDGDAV--HGEYTLLEADGSVRKVEYTAD 395
            D  +   +   GD+  +H+  DGD+V  H +Y     D  VR  +Y  D
Sbjct: 1863 DVRHDEYNDEDGDSDVRHDDYDGDSVVRHDDYNDDNGDSDVRHDDYDGD 1911


>SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)
          Length = 1214

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 115  YAAPVAKVITPAHKVLLSAHHEEEYAHPKYDFTYSVADGHSGDNKSQHES-RDGDAVHGE 173
            YA P A+       V  S H  EE    K  F++S+    S     +++  + G+ +   
Sbjct: 981  YAGPSAQNNRGNASVASSGHLPEEIVTGKKKFSFSIEVNFSPAQSEENDGPKYGEGIEDR 1040

Query: 174  YTLLEADGSVRKVEYTADDHHGFNAVVSN 202
            Y  +     +  V YTAD++  F + +S+
Sbjct: 1041 YDRVHL-SPIPSVGYTADENTSFVSDLSD 1068


>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
          Length = 2157

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 7/78 (8%)

Query: 356  DGHSGDNKSQHESRDGDAVHGEYTLLEA--DGSVRKVEYTADDH---HGFNAVVSNSAPA 410
            D H G  K++ ++ DGD   G+   +EA  D SV     + +D    H    + ++ +  
Sbjct: 1566 DSHEGKEKNEWDNYDGDNDDGDSKTIEANKDKSVYHHSESLNDEEELHPPQLIRNSQSTL 1625

Query: 411  HHVAH--AGHTPVLLAHH 426
             H+ H  A H   + AHH
Sbjct: 1626 RHLRHGRARHRLKVPAHH 1643


>SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1)
          Length = 244

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 17/69 (24%), Positives = 25/69 (36%)

Query: 127 HKVLLSAHHEEEYAHPKYDFTYSVADGHSGDNKSQHESRDGDAVHGEYTLLEADGSVRKV 186
           H+     H EE   H ++  TY    G        +E   G       T  E  G+ R+ 
Sbjct: 134 HRQQHVTHKEEHGTHRQHHVTYEEEHGTHRQQHVTYEEEHGTHRQHHVTYEEEHGTHRQQ 193

Query: 187 EYTADDHHG 195
             T ++ HG
Sbjct: 194 HVTYEEEHG 202


>SB_32767| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1259

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 15/51 (29%), Positives = 21/51 (41%)

Query: 95  PHATNYIAAAAPVHYASPVHYAAPVAKVITPAHKVLLSAHHEEEYAHPKYD 145
           PHA  + A     HYA P + AAP +++     K     +       P YD
Sbjct: 622 PHAQVFFAGRGVHHYAIPQYTAAPSSEIAKIVKKEPTECNETSSVWRPWYD 672


>SB_18731| Best HMM Match : DUF1309 (HMM E-Value=2)
          Length = 356

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 133 AHHEEEYAHPKYDFTYSVADGHSGDNKSQHESRDGDAVHGEYTLLEADGSVRKVEYTADD 192
           A+ +E+  H +   T   AD  S D KSQ      D   G    L   GS+   +   D 
Sbjct: 274 AYRKEQVPHAR---TNQTADDTSADKKSQESRPKRDLYTGYLDYLHYQGSLWHPKVKRDT 330

Query: 193 HHGFNAVVSN 202
              F+ V SN
Sbjct: 331 DDQFDFVTSN 340


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.128    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,549,551
Number of Sequences: 59808
Number of extensions: 438885
Number of successful extensions: 929
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 924
Number of HSP's gapped (non-prelim): 12
length of query: 426
length of database: 16,821,457
effective HSP length: 84
effective length of query: 342
effective length of database: 11,797,585
effective search space: 4034774070
effective search space used: 4034774070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)