Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000429-TA|BGIBMGA000429-PA|IPR000618|Insect cuticle
protein
(426 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 35 0.13
AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo... 31 2.1
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo... 31 2.1
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo... 31 2.1
U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase... 29 4.8
U10333-1|AAA50224.1| 859|Caenorhabditis elegans RNA polymerase ... 29 4.8
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 34.7 bits (76), Expect = 0.13
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Query: 337 AHHEEEYAHPKYDFAYSVADGHSGDNKSQ---HESRDGDAVHGEYTLLEADGSVRKVEYT 393
AHH E H + + A H G ++S H S HGE+ A +
Sbjct: 417 AHHGEHGTHHGHHGEHHHAPAHHGHHESHGHGHHSPAHHGHHGEHHHAPAHHGHHGEHHH 476
Query: 394 ADDHHGFNAVVSNSAPAHHVAHAGHTPVLLAHH 426
A HHG + + HH +H H+P HH
Sbjct: 477 APAHHGHHG-EHGTHHGHHGSH--HSPAHHGHH 506
Score = 33.1 bits (72), Expect = 0.39
Identities = 31/131 (23%), Positives = 46/131 (35%), Gaps = 10/131 (7%)
Query: 296 HDQPHATNYIAAAAPVHYASPVHYTAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVA 355
H H ++ A A H+ + +PAH HH E + P + +
Sbjct: 467 HHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHH----GHHGEHHHAPAHHGHHGEH 522
Query: 356 DGHSGDNKSQHESRDGDAVHGEYTLLEADGSVRKVEYTADDHHGFNAVVSNSAPAHHVAH 415
H G + H + HGE+ + + HHG + + APAHH H
Sbjct: 523 GTHHGHHGEHHHAPAHHGHHGEHGTHHGHHG----SHHSPAHHGHHG-EHHHAPAHH-GH 576
Query: 416 AGHTPVLLAHH 426
GH HH
Sbjct: 577 HGHHGSHGVHH 587
Score = 32.7 bits (71), Expect = 0.51
Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 10/102 (9%)
Query: 331 HKVLVSAHHE----EEYAHPKYDFAYSVADGHSGDNKSQHESRDGDAVHGEYTLLEADGS 386
H+ AHHE E + H + + V H G++ H S HG + +
Sbjct: 374 HEHKDGAHHEHKEGEHHEHAAHHDEHGVHHRHHGEHHGTHHSPAHHGEHGTHHGHHGEHH 433
Query: 387 VRKVEYTADDHHGFNAVVSNSAPAHHVAHA--GHTPVLLAHH 426
+ + HG + +PAHH H H P HH
Sbjct: 434 HAPAHHGHHESHGH----GHHSPAHHGHHGEHHHAPAHHGHH 471
Score = 31.1 bits (67), Expect = 1.6
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 7/94 (7%)
Query: 339 HEEEYAHPKYDFAYSVADGHSGDNKSQHESRDGDAVHGEYTLLEADGSVRKV-EYTADDH 397
H E + H + A+ G G + H + G A HG + + E+ D H
Sbjct: 589 HHESHGHGHHAPAHHGHHGEHGVHHGHHGAGYG-AHHGHHGAHHHHAPHHEHHEHHGDHH 647
Query: 398 HGFNAVV-----SNSAPAHHVAHAGHTPVLLAHH 426
HG + V ++ + AHH H GH AHH
Sbjct: 648 HGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHH 681
Score = 30.3 bits (65), Expect = 2.7
Identities = 33/132 (25%), Positives = 47/132 (35%), Gaps = 8/132 (6%)
Query: 296 HDQPHATNYIAAAAPVHYASP-VHYTAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSV 354
H + H + A A H+ VH+ A AH AHH H ++
Sbjct: 589 HHESHGHGHHAPAHHGHHGEHGVHHGHHGAGY--GAHHGHHGAHHHHAPHHEHHEHHGDH 646
Query: 355 ADGHSGDNKSQHESRDGDAVHGEYTLLEADGSVRKVEYTADDHHGFNAVVSNSAPAHHVA 414
G G + H + A HG + G+ ++ HHG + + AHH A
Sbjct: 647 HHGSHGVHHGHHGTHHSLAHHGHHG---GHGTHHGAHHSPA-HHGHHGA-HHEHGAHHGA 701
Query: 415 HAGHTPVLLAHH 426
H GH HH
Sbjct: 702 HHGHHDDKENHH 713
Score = 28.7 bits (61), Expect = 8.3
Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 133 AHHEEEYAHPKYDFTYSVADGHSGDNKSQ---HESRDGDAVHGEYTLLEADGSVRKVEYT 189
AHH E H + + A H G ++S H S HGE+ A +
Sbjct: 417 AHHGEHGTHHGHHGEHHHAPAHHGHHESHGHGHHSPAHHGHHGEHHHAPAHHGHHGEHHH 476
Query: 190 ADDHHGFNAVVSNTAPAHH 208
A HHG + T HH
Sbjct: 477 APAHHGHHG-EHGTHHGHH 494
>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-5 protein.
Length = 2238
Score = 30.7 bits (66), Expect = 2.1
Identities = 20/70 (28%), Positives = 31/70 (44%)
Query: 307 AAAPVHYASPVHYTAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADGHSGDNKSQH 366
A P A P+ + A I A V A E + + S DG + +NKS+H
Sbjct: 1504 ATGPRCVAVPMRFGATSRAFIPAAAFASVPARVESDEEEEDNSGSESGEDGAASENKSEH 1563
Query: 367 ESRDGDAVHG 376
S +G++ +G
Sbjct: 1564 GSENGESGNG 1573
Score = 30.3 bits (65), Expect = 2.7
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 103 AAAPVHYASPVHYAAPVAKVITPAHKVLLSAHHEEEYAHPKYDFTYSVADGHSGDNKSQH 162
A P A P+ + A I A + A E + + S DG + +NKS+H
Sbjct: 1504 ATGPRCVAVPMRFGATSRAFIPAAAFASVPARVESDEEEEDNSGSESGEDGAASENKSEH 1563
Query: 163 ESRDGDAVHG 172
S +G++ +G
Sbjct: 1564 GSENGESGNG 1573
>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform a protein.
Length = 2276
Score = 30.7 bits (66), Expect = 2.1
Identities = 20/70 (28%), Positives = 31/70 (44%)
Query: 307 AAAPVHYASPVHYTAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADGHSGDNKSQH 366
A P A P+ + A I A V A E + + S DG + +NKS+H
Sbjct: 1542 ATGPRCVAVPMRFGATSRAFIPAAAFASVPARVESDEEEEDNSGSESGEDGAASENKSEH 1601
Query: 367 ESRDGDAVHG 376
S +G++ +G
Sbjct: 1602 GSENGESGNG 1611
Score = 30.3 bits (65), Expect = 2.7
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 103 AAAPVHYASPVHYAAPVAKVITPAHKVLLSAHHEEEYAHPKYDFTYSVADGHSGDNKSQH 162
A P A P+ + A I A + A E + + S DG + +NKS+H
Sbjct: 1542 ATGPRCVAVPMRFGATSRAFIPAAAFASVPARVESDEEEEDNSGSESGEDGAASENKSEH 1601
Query: 163 ESRDGDAVHG 172
S +G++ +G
Sbjct: 1602 GSENGESGNG 1611
>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform b protein.
Length = 2238
Score = 30.7 bits (66), Expect = 2.1
Identities = 20/70 (28%), Positives = 31/70 (44%)
Query: 307 AAAPVHYASPVHYTAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADGHSGDNKSQH 366
A P A P+ + A I A V A E + + S DG + +NKS+H
Sbjct: 1504 ATGPRCVAVPMRFGATSRAFIPAAAFASVPARVESDEEEEDNSGSESGEDGAASENKSEH 1563
Query: 367 ESRDGDAVHG 376
S +G++ +G
Sbjct: 1564 GSENGESGNG 1573
Score = 30.3 bits (65), Expect = 2.7
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 103 AAAPVHYASPVHYAAPVAKVITPAHKVLLSAHHEEEYAHPKYDFTYSVADGHSGDNKSQH 162
A P A P+ + A I A + A E + + S DG + +NKS+H
Sbjct: 1504 ATGPRCVAVPMRFGATSRAFIPAAAFASVPARVESDEEEEDNSGSESGEDGAASENKSEH 1563
Query: 163 ESRDGDAVHG 172
S +G++ +G
Sbjct: 1564 GSENGESGNG 1573
>U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase ii
(b) subunit protein2 protein.
Length = 1193
Score = 29.5 bits (63), Expect = 4.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 147 TYSVADGHSGDNKSQHESRDG 167
TYS+A G+ GD K H+SR G
Sbjct: 451 TYSLATGNWGDQKKAHQSRAG 471
>U10333-1|AAA50224.1| 859|Caenorhabditis elegans RNA polymerase II,
second largestsubunit protein.
Length = 859
Score = 29.5 bits (63), Expect = 4.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 147 TYSVADGHSGDNKSQHESRDG 167
TYS+A G+ GD K H+SR G
Sbjct: 252 TYSLATGNWGDQKKAHQSRAG 272
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.315 0.128 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,345,226
Number of Sequences: 27539
Number of extensions: 317762
Number of successful extensions: 811
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 785
Number of HSP's gapped (non-prelim): 23
length of query: 426
length of database: 12,573,161
effective HSP length: 83
effective length of query: 343
effective length of database: 10,287,424
effective search space: 3528586432
effective search space used: 3528586432
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
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