GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000429-TA|BGIBMGA000429-PA|IPR000618|Insect cuticle
protein
         (426 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29070.2 68415.m03533 ubiquitin fusion degradation UFD1 famil...    33   0.48 
At2g29070.1 68415.m03534 ubiquitin fusion degradation UFD1 famil...    33   0.48 

>At2g29070.2 68415.m03533 ubiquitin fusion degradation UFD1 family
           protein similar to SP|P70362 Ubiquitin fusion
           degradation protein 1 homolog (UB fusion protein 1) {Mus
           musculus}; contains Pfam profile PF03152: Ubiquitin
           fusion degradation protein UFD1
          Length = 312

 Score = 32.7 bits (71), Expect = 0.48
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 97  ATNYIAAAAPVHYASPVHYAAPVA-KVITPAHKVLLSAHHEEEYAHPKYDFTYSVADGHS 155
           A + I     V +A P+ Y  P   + +TP++K  L    EEE A     FT     G  
Sbjct: 164 AVSIIETDCEVDFAPPLDYKEPEKPQKLTPSNKRPLQVKEEEEPASKVPKFTPFTGSGKR 223

Query: 156 GDNKSQHESRDGDAVHGE 173
            D K+Q ++   D    E
Sbjct: 224 LDGKAQTQTEPEDTKQQE 241


>At2g29070.1 68415.m03534 ubiquitin fusion degradation UFD1 family
           protein similar to SP|P70362 Ubiquitin fusion
           degradation protein 1 homolog (UB fusion protein 1) {Mus
           musculus}; contains Pfam profile PF03152: Ubiquitin
           fusion degradation protein UFD1
          Length = 280

 Score = 32.7 bits (71), Expect = 0.48
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 97  ATNYIAAAAPVHYASPVHYAAPVA-KVITPAHKVLLSAHHEEEYAHPKYDFTYSVADGHS 155
           A + I     V +A P+ Y  P   + +TP++K  L    EEE A     FT     G  
Sbjct: 132 AVSIIETDCEVDFAPPLDYKEPEKPQKLTPSNKRPLQVKEEEEPASKVPKFTPFTGSGKR 191

Query: 156 GDNKSQHESRDGDAVHGE 173
            D K+Q ++   D    E
Sbjct: 192 LDGKAQTQTEPEDTKQQE 209


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.128    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,758,612
Number of Sequences: 28952
Number of extensions: 286345
Number of successful extensions: 617
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 615
Number of HSP's gapped (non-prelim): 4
length of query: 426
length of database: 12,070,560
effective HSP length: 83
effective length of query: 343
effective length of database: 9,667,544
effective search space: 3315967592
effective search space used: 3315967592
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)