Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000428-TA|BGIBMGA000428-PA|IPR000618|Insect cuticle
protein
         (224 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    28   6.2  
U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase...    27   8.2  
U10333-1|AAA50224.1|  859|Caenorhabditis elegans RNA polymerase ...    27   8.2  

>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 135 AHHEEEYAHPKYDFAYSVADGHSGDNKSQ---HESRDGDAVHGEYTLVEADGSVRKVEYT 191
           AHH E   H  +   +  A  H G ++S    H S      HGE+    A        + 
Sbjct: 417 AHHGEHGTHHGHHGEHHHAPAHHGHHESHGHGHHSPAHHGHHGEHHHAPAHHGHHGEHHH 476

Query: 192 ADDHHG 197
           A  HHG
Sbjct: 477 APAHHG 482


>U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase ii
           (b) subunit protein2 protein.
          Length = 1193

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 150 YSVADGHSGDNKSQHESRDG 169
           YS+A G+ GD K  H+SR G
Sbjct: 452 YSLATGNWGDQKKAHQSRAG 471


>U10333-1|AAA50224.1|  859|Caenorhabditis elegans RNA polymerase II,
           second largestsubunit protein.
          Length = 859

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 150 YSVADGHSGDNKSQHESRDG 169
           YS+A G+ GD K  H+SR G
Sbjct: 253 YSLATGNWGDQKKAHQSRAG 272


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.314    0.128    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,301,341
Number of Sequences: 27539
Number of extensions: 103570
Number of successful extensions: 192
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 186
Number of HSP's gapped (non-prelim): 7
length of query: 224
length of database: 12,573,161
effective HSP length: 79
effective length of query: 145
effective length of database: 10,397,580
effective search space: 1507649100
effective search space used: 1507649100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 58 (27.5 bits)