GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000428-TA|BGIBMGA000428-PA|IPR000618|Insect cuticle
protein
         (224 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0602 + 19183549-19184919                                         29   2.3  
03_02_0213 + 6480521-6480644,6482347-6482499,6482582-6482980,648...    28   5.3  
07_03_1093 + 23912303-23912467,23912671-23912801,23913079-239130...    27   9.3  

>08_02_0602 + 19183549-19184919
          Length = 456

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 131 VLVSAHHEEE---YAHPKYDFAYSVADGHSGDNKSQHESRDG 169
           +L+SA HE     YA+ + D A   ADGH   ++SQ E   G
Sbjct: 227 LLLSAEHEVVDALYANQEADAAILHADGHHNQDESQREHHHG 268


>03_02_0213 +
           6480521-6480644,6482347-6482499,6482582-6482980,
           6483158-6483234,6483990-6485312
          Length = 691

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 147 DFAYSVADGHSGDNKSQHESRDGDAVHGEYTLVEADGSVRK--VEYTADDHHGF-NAV 201
           ++A S  DG  G  KSQ + RD D   GE    +   + +K  V ++ + H  F NAV
Sbjct: 162 EYASSANDGAEGSWKSQKKKRDKDDDDGELESGDPSSTSKKPRVVWSVELHQQFVNAV 219


>07_03_1093 +
           23912303-23912467,23912671-23912801,23913079-23913087,
           23913146-23913228,23914494-23914596,23915988-23916066,
           23916174-23916274,23916371-23916479
          Length = 259

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/47 (34%), Positives = 22/47 (46%)

Query: 157 SGDNKSQHESRDGDAVHGEYTLVEADGSVRKVEYTADDHHGFNAVVS 203
           S DN  +       +  G Y LV  D +V  VEY+     G+N VV+
Sbjct: 92  SADNTVRRSLMLAFSSGGNYFLVRHDAAVSCVEYSYSTVSGYNLVVA 138


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.128    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,052,844
Number of Sequences: 37544
Number of extensions: 132036
Number of successful extensions: 218
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 217
Number of HSP's gapped (non-prelim): 3
length of query: 224
length of database: 14,793,348
effective HSP length: 79
effective length of query: 145
effective length of database: 11,827,372
effective search space: 1714968940
effective search space used: 1714968940
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 58 (27.5 bits)