GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000428-TA|BGIBMGA000428-PA|IPR000618|Insect cuticle
protein
         (224 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19200.1 68417.m02833 proline-rich family protein contains pr...    29   2.6  
At4g38480.1 68417.m05438 transducin family protein / WD-40 repea...    28   4.5  

>At4g19200.1 68417.m02833 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 179

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 118 AAPVAKVIAPAHKVLVSAHHEEEYA--HPKYDFAYSVADGHSGDNKSQHESRDGDAVHGE 175
           AA  A     AH V  ++H+   +A  H  Y  A +   GH G  K +H    G   HG+
Sbjct: 100 AAGAAAAAYGAHHVGHASHNPYGHAVGHGGYGHAPAHGFGHGGHGKFKHGKHGGKFKHGK 159

Query: 176 Y 176
           +
Sbjct: 160 H 160


>At4g38480.1 68417.m05438 transducin family protein / WD-40 repeat
           family protein contains contains Pfam PF00400: WD
           domain, G-beta repeat (7 copies, 3 weak);similar to gene
           PC326 protein - mouse, PIR2:S37694
          Length = 471

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 134 SAHHEEEYAHPKYDFAYSVADGHSGDNKSQHESRDGDAVHGEYTLVEADGSVRKVEYTAD 193
           +A     + +P++   Y V D    D++S  ES D D    E    E +G V  VE T D
Sbjct: 392 NAKQASGFGNPRWFDGYYVDDDDDSDDESSEESSDDDDSSEE----EENGEV-DVEITKD 446

Query: 194 D 194
           D
Sbjct: 447 D 447


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.128    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,102,265
Number of Sequences: 28952
Number of extensions: 97265
Number of successful extensions: 136
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 136
Number of HSP's gapped (non-prelim): 2
length of query: 224
length of database: 12,070,560
effective HSP length: 78
effective length of query: 146
effective length of database: 9,812,304
effective search space: 1432596384
effective search space used: 1432596384
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 58 (27.5 bits)