Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000426-TA|BGIBMGA000426-PA|IPR000618|Insect cuticle
protein
         (201 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67220.1 68414.m07651 zinc finger protein-related similar to ...    30   0.93 
At5g58100.1 68418.m07270 expressed protein                             28   3.8  
At5g22430.1 68418.m02616 expressed protein                             27   6.6  
At5g66140.1 68418.m08332 20S proteasome alpha subunit D2 (PAD2) ...    27   8.7  
At3g51260.1 68416.m05611 20S proteasome alpha subunit D (PAD1)         27   8.7  

>At1g67220.1 68414.m07651 zinc finger protein-related similar to
            SP|Q09472 E1A-associated protein p300 {Homo sapiens},
            SP|Q92793 CREB-binding protein {Homo sapiens}; contains
            Pfam profiles PF00569: Zinc finger ZZ type, PF00628:
            PHD-finger, PF02135: TAZ zinc finger
          Length = 1357

 Score = 30.3 bits (65), Expect = 0.93
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 75   RNVPSPHQYPRTKPSLHSFTKAQDDGKAFKTDEPND 110
            + +P  H Y R     H  +K Q +G  F T E ND
Sbjct: 1131 QELPGEHIYKRMDKEKHQLSKVQVNGVLFSTTEDND 1166


>At5g58100.1 68418.m07270 expressed protein 
          Length = 945

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 36  ESRHGDVVRGVYTLYEPDGA-LRTVEYTADALHGFNAVVRRNV 77
           E+R+GD +R ++TL E   + +R V  T   LH  +    R V
Sbjct: 870 ETRYGDAMRFLHTLEEATSSFVREVNATVGVLHPIHCTKERKV 912


>At5g22430.1 68418.m02616 expressed protein
          Length = 172

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 53  DGALRTVEYTADALHGFNAVVRRNVPSPHQYPRTKPSLHS-FTKAQDDGKAFKTDEPNDF 111
           DG+ R+V  TAD     N + +  +  P Q    K +L S   K++ D K   T  P  F
Sbjct: 67  DGSFRSVLPTADKKGSINCLAKL-LGGPEQLYAHKHNLVSELVKSKHDSKVLTTSNPLAF 125

Query: 112 S 112
           S
Sbjct: 126 S 126


>At5g66140.1 68418.m08332 20S proteasome alpha subunit D2 (PAD2)
          (PRS1) (PRC6) identical to SP|O24616 Proteasome subunit
          alpha type 7-2 (EC 3.4.25.1) (20S proteasome alpha
          subunit D2) {Arabidopsis thaliana}
          Length = 250

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 48 TLYEPDGALRTVEYTADALHGFNAVV 73
          T++ PDG L  VEY  +A+   NA V
Sbjct: 9  TVFSPDGHLFQVEYALEAVRKGNAAV 34


>At3g51260.1 68416.m05611 20S proteasome alpha subunit D (PAD1)
          Length = 250

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 48 TLYEPDGALRTVEYTADALHGFNAVV 73
          T++ PDG L  VEY  +A+   NA V
Sbjct: 9  TVFSPDGHLFQVEYALEAVRKGNAAV 34


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.130    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,458,880
Number of Sequences: 28952
Number of extensions: 126554
Number of successful extensions: 194
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 191
Number of HSP's gapped (non-prelim): 5
length of query: 201
length of database: 12,070,560
effective HSP length: 78
effective length of query: 123
effective length of database: 9,812,304
effective search space: 1206913392
effective search space used: 1206913392
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 57 (27.1 bits)