GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000426-TA|BGIBMGA000426-PA|IPR000618|Insect cuticle
protein
         (201 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0563 + 18546967-18547407,18547503-18548007,18548271-185483...    31   0.64 
08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323     27   7.9  
06_01_1135 - 9379361-9381018,9381356-9381665,9381811-9382764           27   7.9  

>09_04_0563 +
          18546967-18547407,18547503-18548007,18548271-18548314,
          18548639-18548734,18548830-18549340,18549506-18549540
          Length = 543

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 31 RKTHWESRHGDVVRGVYTLYEPDGA 55
          R++HWES   DV R +  L++ DGA
Sbjct: 4  RRSHWESSSEDVTRPLLPLHDDDGA 28


>08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323
          Length = 319

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 31  RKTHWESRHGDVVR--GVYTLYEPDGALRTVEYTADALHGFNAVV 73
           R+ H   +   + R     T++ PDG L  VEY  +A+   NA V
Sbjct: 60  RRRHHHHQQAGMARYDRAITVFSPDGHLFQVEYALEAVRKGNAAV 104


>06_01_1135 - 9379361-9381018,9381356-9381665,9381811-9382764
          Length = 973

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 32  KTHWESRHGDVVRGVYTLYEPDGALRTVEYTADAL 66
           KT+ E   G +VR   TLY+PD  L  +++   A+
Sbjct: 704 KTYMEGLVGALVRMTMTLYDPDVLLAAMDHNFTAV 738


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.130    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,231,031
Number of Sequences: 37544
Number of extensions: 161817
Number of successful extensions: 233
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 231
Number of HSP's gapped (non-prelim): 3
length of query: 201
length of database: 14,793,348
effective HSP length: 79
effective length of query: 122
effective length of database: 11,827,372
effective search space: 1442939384
effective search space used: 1442939384
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 58 (27.5 bits)