GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000426-TA|BGIBMGA000426-PA|IPR000618|Insect cuticle
protein
         (201 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.21 
SB_27031| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_3738| Best HMM Match : efhand (HMM E-Value=8.5e-05)                 27   8.0  

>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2014

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 7/76 (9%)

Query: 44   RGVYTLYEPDGALRTVEYTADALHGF--NAVVRRNVPSPHQYPRTKPSLHSFTKA----- 96
            +G Y  ++ DG  RT+EY +    G+   A  R     P+ Y  TK S    T+      
Sbjct: 1742 KGSYDTHDVDGRRRTIEYYSGTPQGYLPPAHTRPYPVQPNIYRLTKKSEEEATECEDGSR 1801

Query: 97   QDDGKAFKTDEPNDFS 112
            +DDG+  +  +P D S
Sbjct: 1802 EDDGERVRITDPYDSS 1817


>SB_27031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 53  DGALRTVEYTADALHGFNAVVRRNVPSPHQYP-RTKPS----LHSFTKAQDDGKAFK 104
           D ALRTV + AD +     ++ R  P   + P  TKPS    L S  KA+ D K  K
Sbjct: 111 DHALRTVSFIAD-IGDVMVLMARRPPGEQENPLETKPSAQQILASVGKAETDPKMIK 166


>SB_3738| Best HMM Match : efhand (HMM E-Value=8.5e-05)
          Length = 447

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 5/47 (10%)

Query: 8   IKEMYNMAKYEYNYEVSDLRTGDRKTHWESR-----HGDVVRGVYTL 49
           I++   M+K +Y   + D +  +R+ HWE+      H DV+R  + +
Sbjct: 351 IRDKVAMSKQKYFERLHDRKRKEREKHWEALGPSHIHSDVLRNYFRI 397


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.130    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,031,326
Number of Sequences: 59808
Number of extensions: 189427
Number of successful extensions: 279
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 279
Number of HSP's gapped (non-prelim): 3
length of query: 201
length of database: 16,821,457
effective HSP length: 79
effective length of query: 122
effective length of database: 12,096,625
effective search space: 1475788250
effective search space used: 1475788250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 58 (27.5 bits)