GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000426-TA|BGIBMGA000426-PA|IPR000618|Insect cuticle
protein
         (201 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   3.5  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   8.1  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   8.1  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   8.1  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/26 (26%), Positives = 15/26 (57%)

Query: 16  KYEYNYEVSDLRTGDRKTHWESRHGD 41
           +++Y+YE+S+   G+    W    G+
Sbjct: 266 EFKYSYEISNAFRGNNNLKWLVNWGE 291


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/27 (25%), Positives = 15/27 (55%)

Query: 9   KEMYNMAKYEYNYEVSDLRTGDRKTHW 35
           K ++N   Y+YNY  ++     +K ++
Sbjct: 88  KTIHNNNNYKYNYNNNNYNNNCKKLYY 114


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/27 (25%), Positives = 15/27 (55%)

Query: 9   KEMYNMAKYEYNYEVSDLRTGDRKTHW 35
           K ++N   Y+YNY  ++     +K ++
Sbjct: 88  KTIHNNNNYKYNYNNNNYNNNCKKLYY 114


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/27 (25%), Positives = 15/27 (55%)

Query: 9   KEMYNMAKYEYNYEVSDLRTGDRKTHW 35
           K ++N   Y+YNY  ++     +K ++
Sbjct: 88  KTIHNNNNYKYNYNNNNYNNNCKKLYY 114


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.130    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,660
Number of Sequences: 429
Number of extensions: 1444
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 201
length of database: 140,377
effective HSP length: 55
effective length of query: 146
effective length of database: 116,782
effective search space: 17050172
effective search space used: 17050172
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 42 (21.0 bits)