Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000424-TA|BGIBMGA000424-PA|IPR002076|GNS1/SUR4 membrane
protein
(185 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U61954-11|AAK29807.1| 274|Caenorhabditis elegans Fatty acid elo... 62 2e-10
Z19154-4|CAA79555.1| 291|Caenorhabditis elegans Hypothetical pr... 58 4e-09
Z68749-3|CAA92958.1| 288|Caenorhabditis elegans Hypothetical pr... 57 7e-09
AF244356-1|AAF70462.1| 288|Caenorhabditis elegans long chain po... 57 7e-09
Z81058-5|CAB02921.1| 274|Caenorhabditis elegans Hypothetical pr... 48 3e-06
AL132949-2|CAB61069.1| 286|Caenorhabditis elegans Hypothetical ... 48 3e-06
Z68749-1|CAA92960.2| 309|Caenorhabditis elegans Hypothetical pr... 45 3e-05
U41011-5|AAA82288.2| 320|Caenorhabditis elegans Fatty acid elon... 44 7e-05
U61954-8|AAK29808.1| 286|Caenorhabditis elegans Fatty acid elon... 34 0.071
Z92837-3|CAB07402.2| 467|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z66514-3|CAA91343.1| 854|Caenorhabditis elegans Hypothetical pr... 27 6.1
AY342006-1|AAQ22724.1| 854|Caenorhabditis elegans TRP-3 channel... 27 6.1
AJ276029-1|CAC81656.1| 854|Caenorhabditis elegans TRP homologou... 27 6.1
Z81468-1|CAB03875.3| 1010|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z80220-6|CAB02305.1| 282|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z75537-1|CAA99834.1| 455|Caenorhabditis elegans Hypothetical pr... 27 8.1
U97189-2|AAC48165.2| 336|Caenorhabditis elegans Serpentine rece... 27 8.1
>U61954-11|AAK29807.1| 274|Caenorhabditis elegans Fatty acid
elongation protein 6 protein.
Length = 274
Score = 62.1 bits (144), Expect = 2e-10
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 10/135 (7%)
Query: 5 IFFVLRKKFDHVSTLHVIHHGVMPMSVWFGVKFTPGGHSTFFGLLNTFVHIVMYTYYMLA 64
+F +LRKK + LH HH V+ M+ F G +T+ +N VH +MY YYML
Sbjct: 128 LFIILRKK--PLMFLHWYHH-VLTMNYAFMSFEANLGFNTWITWMNFSVHSIMYGYYMLR 184
Query: 65 AMGPHMRKYLWWKKYLTTLQMVQFV---GIMVHAFQLLFI--ECDYPRAFVWWIGMHAVM 119
+ G ++ W K +TT+Q++QFV I+ H L D + W+ + +
Sbjct: 185 SFG--VKVPAWIAKNITTMQILQFVITHFILFHVGYLAVTGQSVDSTPGYYWFCLLMEIS 242
Query: 120 FFFLFKDFYDQSYSK 134
+ LF +FY QSY K
Sbjct: 243 YVVLFGNFYYQSYIK 257
>Z19154-4|CAA79555.1| 291|Caenorhabditis elegans Hypothetical
protein C40H1.4 protein.
Length = 291
Score = 58.0 bits (134), Expect = 4e-09
Identities = 49/149 (32%), Positives = 77/149 (51%), Gaps = 14/149 (9%)
Query: 5 IFFVLRKKFDHVSTLHVIHHG-VMPMSVWFGVKFTPGGHSTFFGLLNTFVHIVMYTYYML 63
+F +LRK+ + LH HH V+ +V G + T G F+ L+N F H +MYTYY +
Sbjct: 149 MFIILRKR--PLIFLHYYHHAAVLIYTVHSGAEHTAAGR--FYILMNYFAHSLMYTYYTV 204
Query: 64 AAMGPHMRKYLWWKKYLTTLQMVQF---VGI--MVHAFQLLF-IECDYPRAFVWWIGMHA 117
+AMG + K W +TT+Q Q VGI MV+ + + + C A ++ +
Sbjct: 205 SAMGYRLPK--WVSMTVTTVQTTQMLAGVGITWMVYKVKTEYKLPCQQSVANLYLAFVIY 262
Query: 118 VMFFFLFKDFYDQSY-SKPKVRAKSPQPE 145
V F LF F+ ++Y K ++KS + E
Sbjct: 263 VTFAILFIQFFVKAYIIKSSKKSKSVKNE 291
>Z68749-3|CAA92958.1| 288|Caenorhabditis elegans Hypothetical
protein F56H11.4 protein.
Length = 288
Score = 57.2 bits (132), Expect = 7e-09
Identities = 44/136 (32%), Positives = 70/136 (51%), Gaps = 15/136 (11%)
Query: 5 IFFVLRKKFDHVSTLHVIHHGVMPMSVWFGVKFTPGGHSTFFGL-LNTFVHIVMYTYYML 63
IF VLRK+ + LH HH + + W+ TPG + +G+ LN VH MY+YY L
Sbjct: 142 IFLVLRKR--PLMFLHWYHHILTMIYAWYSHPLTPGFNR--YGIYLNFVVHAFMYSYYFL 197
Query: 64 AAMGPHMRKYLWWKKYLTTLQMVQFV---GIMVHAFQLLFI---ECDY-PRAFVWWIGMH 116
+M + ++ + +T+LQ+VQF+ ++ H L+ CD+ P F + M
Sbjct: 198 RSMKIRVPGFI--AQAITSLQIVQFIISCAVLAHLGYLMHFTNANCDFEPSVFKLAVFMD 255
Query: 117 AVMFFFLFKDFYDQSY 132
+ LF +F+ QSY
Sbjct: 256 TT-YLALFVNFFLQSY 270
>AF244356-1|AAF70462.1| 288|Caenorhabditis elegans long chain
polyunsaturated fattyacid elongation enzyme protein.
Length = 288
Score = 57.2 bits (132), Expect = 7e-09
Identities = 44/136 (32%), Positives = 70/136 (51%), Gaps = 15/136 (11%)
Query: 5 IFFVLRKKFDHVSTLHVIHHGVMPMSVWFGVKFTPGGHSTFFGL-LNTFVHIVMYTYYML 63
IF VLRK+ + LH HH + + W+ TPG + +G+ LN VH MY+YY L
Sbjct: 142 IFLVLRKR--PLMFLHWYHHILTMIYAWYSHPLTPGFNR--YGIYLNFVVHAFMYSYYFL 197
Query: 64 AAMGPHMRKYLWWKKYLTTLQMVQFV---GIMVHAFQLLFI---ECDY-PRAFVWWIGMH 116
+M + ++ + +T+LQ+VQF+ ++ H L+ CD+ P F + M
Sbjct: 198 RSMKIRVPGFI--AQAITSLQIVQFIISCAVLAHLGYLMHFTNANCDFEPSVFKLAVFMD 255
Query: 117 AVMFFFLFKDFYDQSY 132
+ LF +F+ QSY
Sbjct: 256 TT-YLALFVNFFLQSY 270
>Z81058-5|CAB02921.1| 274|Caenorhabditis elegans Hypothetical
protein F11E6.5 protein.
Length = 274
Score = 48.4 bits (110), Expect = 3e-06
Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 16/150 (10%)
Query: 5 IFFVLRKKFDHVSTLHVIHHGVMPMSVWFGVKFTPGGHSTFFGL-LNTFVHIVMYTYYML 63
+F VLRKK V +H HH + V+ V ++ + L LN VH VMY Y+ +
Sbjct: 132 MFLVLRKK--PVIFMHWYHHALT--FVYAVVTYSEHQAWARWSLALNLAVHTVMYFYFAV 187
Query: 64 AAMGPHMRKYLWWKKYLTTLQMVQFVGIMVHAF-QLLFIEC--DYPRAFVWWI-----GM 115
A+ + + K++TT+Q+VQFV I + F L+FI+ P V W G+
Sbjct: 188 RALNIQTPRPV--AKFITTIQIVQFV-ISCYIFGHLVFIKSADSVPGCAVSWNVLSIGGL 244
Query: 116 HAVMFFFLFKDFYDQSYSKPKVRAKSPQPE 145
+ + FLF F+ ++Y + + K+ + E
Sbjct: 245 MYISYLFLFAKFFYKAYIQKRSPTKTSKQE 274
>AL132949-2|CAB61069.1| 286|Caenorhabditis elegans Hypothetical
protein Y53F4B.2 protein.
Length = 286
Score = 48.4 bits (110), Expect = 3e-06
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 10/133 (7%)
Query: 5 IFFVLRKKFDHVSTLHVIHHGVMPMSVWFG-VKFTPGGHSTFFGLLNTFVHIVMYTYYML 63
+F VLRK+ V LH HH V+ + W ++ T G +F +N VH +MYTYY +
Sbjct: 146 MFLVLRKR--PVIFLHWYHHAVVLILSWHAAIELTAPGR--WFIFMNYLVHSIMYTYYAI 201
Query: 64 AAMGPHMRKYL-WWKKYLTTLQMVQFVGI--MVHAFQLLFIECDYP-RAFVWWIGMHAVM 119
++G + K + +L TLQM+ V I +V +L C G++A
Sbjct: 202 TSIGYRLPKIVSMTVTFLQTLQMLIGVSISCIVLYLKLNGEMCQQSYDNLALSFGIYA-S 260
Query: 120 FFFLFKDFYDQSY 132
F LF F++ +Y
Sbjct: 261 FLVLFSSFFNNAY 273
>Z68749-1|CAA92960.2| 309|Caenorhabditis elegans Hypothetical
protein F56H11.3 protein.
Length = 309
Score = 45.2 bits (102), Expect = 3e-05
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 13/134 (9%)
Query: 6 FFVLRKKFDHVSTLHVIHHGVMPMSVWFGVKF-TPGGHSTFFGLLNTFVHIVMYTYYMLA 64
F VLRKK + LH HH M V+F + TP S ++N FVH MY YY
Sbjct: 165 FLVLRKK--PLIFLHWYHH--MATFVFFCSNYPTPSSQSRVGVIVNLFVHAFMYPYYFTR 220
Query: 65 AMGPHMRKYLWWKKYLTTLQMVQFV------GIMVHAFQLLFIECDYPRAFVWWIGMHAV 118
+M + + +T LQ+ QF+ +M ++ CD P + +
Sbjct: 221 SMNIKVPAKI--SMAVTVLQLTQFMCFIYGCTLMYYSLATNQYTCDTPMFVLHSTFALSS 278
Query: 119 MFFFLFKDFYDQSY 132
+F LF +F+ ++Y
Sbjct: 279 SYFVLFANFFHKAY 292
>U41011-5|AAA82288.2| 320|Caenorhabditis elegans Fatty acid
elongation protein 3 protein.
Length = 320
Score = 44.0 bits (99), Expect = 7e-05
Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 12/140 (8%)
Query: 5 IFFVLRKKFDHVSTLHVIHHGVMPMSVWFGVK-FTPGGHSTFFGLLNTFVHIVMYTYYML 63
IF VLRK+ + LH HH + + W K T G +F +N VH +MY+YY L
Sbjct: 137 IFIVLRKR--PLIFLHWYHHVTVMIYTWHAYKDHTASGR--WFIWMNYGVHALMYSYYAL 192
Query: 64 AAMGPHMRKYLWWKKYLTTLQMVQFVGIMVHAFQLLFIECDYPRAFVWW--IGM-HAVMF 120
++ + K + +TTLQ+ Q V ++ + I+ W +G+ V F
Sbjct: 193 RSLKFRLPKQM--AMVVTTLQLAQMVMGVIIGVTVYRIKSSGEYCQQTWDNLGLCFGVYF 250
Query: 121 --FFLFKDFYDQSYSKPKVR 138
F LF +F+ +Y K R
Sbjct: 251 TYFLLFANFFYHAYVKKNNR 270
>U61954-8|AAK29808.1| 286|Caenorhabditis elegans Fatty acid
elongation protein 5 protein.
Length = 286
Score = 33.9 bits (74), Expect = 0.071
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 12/137 (8%)
Query: 5 IFFVLRKKFDHVSTLHVIHHGVMPMSVWFGVKFTPGGHSTFFGLLNTFVHIVMYTYYMLA 64
+F VLRK+ + +H HH + H + +N +H MY YY+L
Sbjct: 134 VFIVLRKR--PLIFMHWYHHALTGYYALV-CYHEDAVHMVWVVWMNYIIHAFMYGYYLLK 190
Query: 65 AMGPHMRKYLWWKKYLTTLQMVQF---VGIMVHAFQLLFIECDYPRAFVW---WIGMHAV 118
++ + + + +TT QMVQF + VH ++E A+ + IG +
Sbjct: 191 SLKVPIPPSV--AQAITTSQMVQFAVAIFAQVHVSYKHYVEGVEGLAYSFRGTAIGFFML 248
Query: 119 -MFFFLFKDFYDQSYSK 134
+F+L+ FY + Y K
Sbjct: 249 TTYFYLWIQFYKEHYLK 265
>Z92837-3|CAB07402.2| 467|Caenorhabditis elegans Hypothetical
protein R03E1.3 protein.
Length = 467
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 111 WWIGMHAVMFFFLFKDFYDQSYSKPKVRAKSPQPELETTEIKELTYQN 158
+WI H++ FF + + QSY + AK P T +I L N
Sbjct: 244 FWIETHSICFFTIMLNIILQSYYGSSLLAKMPPGSGRTPKIVHLYNMN 291
>Z66514-3|CAA91343.1| 854|Caenorhabditis elegans Hypothetical
protein K01A11.4 protein.
Length = 854
Score = 27.5 bits (58), Expect = 6.1
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
Query: 26 VMPMSVWFGVKFTPGGHSTFFGLLNTFVHIVMYTYYMLAA-MGPHMRKYLWW----KKYL 80
+MP V G + L HI MY +++AA + P + Y W + +
Sbjct: 336 LMPFLVMLHAFMPTKGTTMCVPLARFIAHITMYLVFLIAAILRPTIGFYFAWTDSIEVTV 395
Query: 81 TTLQMVQFVGIMVHAFQ--LLFIECDYPRAFV-WWIGMH-AVMFFFLF 124
L++ + +M A + +LF F WW A++F FLF
Sbjct: 396 QALEIFMYAYVMGLALEKGILFYRVGRDGFFAFWWRWFDAALIFIFLF 443
>AY342006-1|AAQ22724.1| 854|Caenorhabditis elegans TRP-3 channel
protein protein.
Length = 854
Score = 27.5 bits (58), Expect = 6.1
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
Query: 26 VMPMSVWFGVKFTPGGHSTFFGLLNTFVHIVMYTYYMLAA-MGPHMRKYLWW----KKYL 80
+MP V G + L HI MY +++AA + P + Y W + +
Sbjct: 336 LMPFLVMLHAFMPTKGTTMCVPLARFIAHITMYLVFLIAAILRPTIGFYFAWTDSIEVTV 395
Query: 81 TTLQMVQFVGIMVHAFQ--LLFIECDYPRAFV-WWIGMH-AVMFFFLF 124
L++ + +M A + +LF F WW A++F FLF
Sbjct: 396 QALEIFMYAYVMGLALEKGILFYRVGRDGFFAFWWRWFDAALIFIFLF 443
>AJ276029-1|CAC81656.1| 854|Caenorhabditis elegans TRP homologous
cation channel proteinprotein.
Length = 854
Score = 27.5 bits (58), Expect = 6.1
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
Query: 26 VMPMSVWFGVKFTPGGHSTFFGLLNTFVHIVMYTYYMLAA-MGPHMRKYLWW----KKYL 80
+MP V G + L HI MY +++AA + P + Y W + +
Sbjct: 336 LMPFLVMLHAFMPTKGTTMCVPLARFIAHITMYLVFLIAAILRPTIGFYFAWTDSIEVTV 395
Query: 81 TTLQMVQFVGIMVHAFQ--LLFIECDYPRAFV-WWIGMH-AVMFFFLF 124
L++ + +M A + +LF F WW A++F FLF
Sbjct: 396 QALEIFMYAYVMGLALEKGILFYRVGRDGFFAFWWRWFDAALIFIFLF 443
>Z81468-1|CAB03875.3| 1010|Caenorhabditis elegans Hypothetical
protein C13B4.1 protein.
Length = 1010
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 89 VGIMVHAFQLLFIECDYPRAFVWWIGMHAVM 119
+ +M+ AF L+ I D+ + W G HA++
Sbjct: 803 IALMIAAFVLILIHKDWKFTTIGWGGKHAII 833
>Z80220-6|CAB02305.1| 282|Caenorhabditis elegans Hypothetical
protein T08G11.2 protein.
Length = 282
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 79 YLTTLQMVQFVGIMVHAFQLLFIECDYPRAFVWWIGMHAVMFF 121
Y TT + + I Q F++C YP + H VMF+
Sbjct: 217 YRTTTKKNRHYSIRTTCDQQFFVDCGYPNVRKHYSLSHLVMFY 259
>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical protein
W06A7.3a protein.
Length = 2607
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 48 LLNTFVHIVMYTYYMLAAMGPHMRKYLWWKKYLTTLQMVQFVGIMVHA 95
LL+ + +V+Y L H RK+ W ++ TT+ + VG ++A
Sbjct: 2321 LLDNLLSLVVYLSISLIIHVKHHRKFRWNEEQATTMSKLGAVGRGLYA 2368
>Z75537-1|CAA99834.1| 455|Caenorhabditis elegans Hypothetical
protein F18E2.1 protein.
Length = 455
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 58 YTYYMLAAMGPHMRKYLWWKKYLTTLQMVQFVGIMVHAFQ 97
Y YY M P M +Y W K+ LTT + + FQ
Sbjct: 232 YGYYYEYGMDPVMTQYDWLKRDLTTANSNRAAHPWIFTFQ 271
>U97189-2|AAC48165.2| 336|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 15 protein.
Length = 336
Score = 27.1 bits (57), Expect = 8.1
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 42 HSTFFGLLNTFVHIVMYTYYMLAAM 66
HST F + F H++++ +Y++ M
Sbjct: 231 HSTKFAVFVVFCHVILFGFYVIGIM 255
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.330 0.141 0.469
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,980,400
Number of Sequences: 27539
Number of extensions: 211298
Number of successful extensions: 616
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 601
Number of HSP's gapped (non-prelim): 18
length of query: 185
length of database: 12,573,161
effective HSP length: 77
effective length of query: 108
effective length of database: 10,452,658
effective search space: 1128887064
effective search space used: 1128887064
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 57 (27.1 bits)
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