Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000424-TA|BGIBMGA000424-PA|IPR002076|GNS1/SUR4 membrane
protein
         (185 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06460.1 68416.m00748 GNS1/SUR4 membrane family protein simil...    57   6e-09
At3g06470.1 68416.m00749 GNS1/SUR4 membrane family protein simil...    52   3e-07
At4g31730.1 68417.m04504 expressed protein                             37   0.007
At1g05790.1 68414.m00605 lipase class 3 family protein contains ...    28   4.4  
At3g11340.1 68416.m01379 UDP-glucoronosyl/UDP-glucosyl transfera...    27   5.8  
At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) famil...    27   7.6  

>At3g06460.1 68416.m00748 GNS1/SUR4 membrane family protein similar
           to SP|P25358 Elongation of fatty acids protein 2 (GNS1
           protein) (V-SNARE bypass mutant gene 2 protein)
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF01151: GNS1/SUR4 family
          Length = 298

 Score = 57.2 bits (132), Expect = 6e-09
 Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 10/135 (7%)

Query: 5   IFFVLRKKFDHVSTLHVIHHGVMPMSVWFGVKFTPGGHSTFFGLLNTFVHIVMYTYYMLA 64
           +  +L K    +S LHV HH  + +  +  ++           +LN+ VH++MY YY L 
Sbjct: 136 LLIILNKSIQRLSFLHVYHHATVVILCYLWLRTRQSMFPVGL-VLNSTVHVIMYGYYFLC 194

Query: 65  AMGPHMRKYLWWKKYLTTLQMVQFVGIMVHAFQLLFIECDYPR--AFVWWI---GMHAVM 119
           A+G   +    WKK +T  QMVQF   M      +  E  +    A +W +   G+    
Sbjct: 195 AIGSRPK----WKKLVTNFQMVQFAFGMGLGAAWMLPEHYFGSGCAGIWTVYFNGVFTAS 250

Query: 120 FFFLFKDFYDQSYSK 134
              LF +F+ ++Y K
Sbjct: 251 LLALFYNFHSKNYEK 265


>At3g06470.1 68416.m00749 GNS1/SUR4 membrane family protein similar
           to SP|P39540 Elongation of fatty acids protein 1
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF01151: GNS1/SUR4 family
          Length = 278

 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 5   IFFVLRKKFDHVSTLHVIHHGVMPMSVWFGVKFTPGGHSTFFGLLNTFVHIVMYTYYMLA 64
           I  +L K    +S LHV HH  + +  +  ++ T         + N+ VH++MY YY L 
Sbjct: 139 ILIILGKSIQRLSFLHVYHHATVVVMCYLWLR-TRQSMFPIALVTNSTVHVIMYGYYFLC 197

Query: 65  AMGPHMRKYLWWKKYLTTLQMVQFV 89
           A+G   +    WK+ +T  Q+VQFV
Sbjct: 198 AVGSRPK----WKRLVTDCQIVQFV 218


>At4g31730.1 68417.m04504 expressed protein
          Length = 158

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 9  LRKKFDHVST-LHVIHHGVMPMSVWFG-VKFTPGGHSTFFGLLNTFVHIVMYTYYMLAAM 66
          ++ KF+ V+T   V HHGV P S W   V +  GG +   GL+   + I+  +Y+ L++ 
Sbjct: 6  VQSKFEDVATSTSVNHHGVTPQSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSSS 65

Query: 67 G 67
          G
Sbjct: 66 G 66


>At1g05790.1 68414.m00605 lipase class 3 family protein contains
           Pfam profile PF01764: Lipase
          Length = 687

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 33  FGVKFTPGGHSTFFGLLNTFVHIVMYTYYMLAAMGPHMRK-----YLWWKKYLTTLQMVQ 87
           F V F  G        + T   ++  T         H RK     +LWW ++   + ++Q
Sbjct: 48  FAVCFAAGVKLAAMVKVGTTQELMAMTIMDSPTQNNHQRKLKYKTWLWWTRFAMVITVLQ 107

Query: 88  FVGIMVHAFQL 98
           F+G     F+L
Sbjct: 108 FIGATYLLFRL 118


>At3g11340.1 68416.m01379 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 447

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 104 DYPRAFVWWIGMHAVMFFFLFKDFYDQSY-SKPKVRAKSPQPELETTEIKELTY 156
           ++PR  +  + + A + F  F    ++ Y S  + +A SP PEL    +K+L +
Sbjct: 123 NFPRIVLRTVNLSAFVAFSKFHVLREKGYLSLQETKADSPVPELPYLRMKDLPW 176


>At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF02136: Nuclear transport factor
           2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
           RRM, RBD, or RNP domain)
          Length = 428

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 157 QNGSLKNGFNKIHTNGTMPRAR 178
           +NG   NG  K+H NGT+  +R
Sbjct: 407 RNGEAHNGDGKVHQNGTVEASR 428


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.330    0.141    0.469 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,653,387
Number of Sequences: 28952
Number of extensions: 191834
Number of successful extensions: 558
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 550
Number of HSP's gapped (non-prelim): 6
length of query: 185
length of database: 12,070,560
effective HSP length: 77
effective length of query: 108
effective length of database: 9,841,256
effective search space: 1062855648
effective search space used: 1062855648
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 57 (27.1 bits)