GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000424-TA|BGIBMGA000424-PA|IPR002076|GNS1/SUR4 membrane
protein
         (185 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    25   0.50 
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   3.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   6.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   6.1  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    21   8.1  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   8.1  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 0.50
 Identities = 10/16 (62%), Positives = 11/16 (68%)

Query: 38  TPGGHSTFFGLLNTFV 53
           TPGGHS F+G L   V
Sbjct: 194 TPGGHSGFWGQLGAAV 209


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 128 YDQSYSKPKVRAKSPQPELETTEIKE-LTYQ 157
           +  S +  K    SP P+LE  E KE LT Q
Sbjct: 217 HPDSPNSKKSATPSPPPQLEVNERKENLTCQ 247


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 79   YLTTLQMVQFVGIMVHAF 96
            +   L ++QF  +M+H F
Sbjct: 1290 FFALLMVIQFFAMMIHRF 1307


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 79   YLTTLQMVQFVGIMVHAF 96
            +   L ++QF  +M+H F
Sbjct: 1290 FFALLMVIQFFAMMIHRF 1307


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 76  WKKYLTTLQMVQFV 89
           WK Y+T + +V FV
Sbjct: 203 WKVYITLVALVLFV 216


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 10/23 (43%), Positives = 11/23 (47%)

Query: 59  TYYMLAAMGPHMRKYLWWKKYLT 81
           TYY LA      RK L+W    T
Sbjct: 91  TYYNLADPARDSRKGLFWSPAAT 113


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.330    0.141    0.469 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,668
Number of Sequences: 317
Number of extensions: 2352
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 6
length of query: 185
length of database: 114,650
effective HSP length: 53
effective length of query: 132
effective length of database: 97,849
effective search space: 12916068
effective search space used: 12916068
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 41 (20.6 bits)