Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000424-TA|BGIBMGA000424-PA|IPR002076|GNS1/SUR4 membrane
protein
(185 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb... 60 3e-10
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha... 49 4e-07
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz... 28 0.96
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 27 1.3
SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|c... 27 1.3
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 2.9
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|... 25 5.1
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 25 9.0
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 9.0
>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 59.7 bits (138), Expect = 3e-10
Identities = 32/87 (36%), Positives = 54/87 (62%), Gaps = 11/87 (12%)
Query: 5 IFFVLRKKFDHVSTLHVIHHGVMPMSVWFGVKFTPGGHSTFFGL--LNTFVHIVMYTYYM 62
+F L+KK ++ LH HHG+ + + + G S +G+ LN +VH++MY+YY
Sbjct: 152 VFLFLKKK--PLAFLHCYHHGITALLCFTQLL---GRTSVQWGVIGLNLYVHVIMYSYYF 206
Query: 63 LAAMGPHMRKYLWWKKYLTTLQMVQFV 89
LAA G + +WWK+++T +Q++QFV
Sbjct: 207 LAACG----RRVWWKQWVTRVQIIQFV 229
>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 49.2 bits (112), Expect = 4e-07
Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 6 FFVLRKKFDHVSTLHVIHHGVMPMSVWFGVKFTPGGHSTFFGLLNTFVHIVMYTYYMLAA 65
F VLRKK + LH HHG + V+ + S +N VH+ MY YY L A
Sbjct: 133 FLVLRKK--PLQFLHCYHHGATAVLVYTQIVGRTS-ISWLIIEINLLVHVTMYYYYYLVA 189
Query: 66 MGPHMRKYLWWKKYLTTLQMVQFVGIMVHAFQLLFIECDYPRAF 109
G + WKK++T Q+VQF + + ++ E Y F
Sbjct: 190 KGIRVP----WKKWVTRFQIVQFFADLGFIYFAVYTEVAYRLKF 229
>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
Fub2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 27.9 bits (59), Expect = 0.96
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 147 ETTEIKELTYQNGSLKNGFNKIHT 170
ETTE+ EL G NGF KI T
Sbjct: 235 ETTELNELRSSIGQSDNGFEKIFT 258
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 75 WWKKYLTTLQMVQFVGIMVHAFQLLFIECDYPRAFVWWIG 114
WW+KY L G+ V A ++F+ YP + W G
Sbjct: 784 WWRKYNYVLAAAMDSGVAV-AGVVIFLCVSYPGGKITWWG 822
>SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 329
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Query: 13 FDHVSTLHVIHHGVMPMSVWFGVK 36
FDH LHV H ++ ++ WFGVK
Sbjct: 165 FDH---LHVGHKVLLTLTAWFGVK 185
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 26.2 bits (55), Expect = 2.9
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 42 HSTFFGLLNTFVHIVMYTYYMLAAMGP 68
+S +FG L+++ +++M YY++ + P
Sbjct: 202 NSPYFGTLSSYGYVLMVLYYLIHVIKP 228
>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 552
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 63 LAAMGPHMRKYLWWKKYLTTLQMVQFVGIMVH 94
L + P K L WK Y T L M+ + +M++
Sbjct: 70 LEPLTPKQDKRLRWKLYFTVLVMLMILDMMLY 101
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 16 VSTLHVIHHGVMPMSVWFGVKFTPGGHSTFFGLLNTFVHIVMYTYYMLAAMGPHMRKYL 74
V + + +GV ++ W G + G L+ F V+ Y LA + P M+ ++
Sbjct: 327 VGWMFFVAYGVYGLAFWEGGRLLHAGDLDVSKLIGCF-FAVLIASYSLANISPKMQSFV 384
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 84 QMVQFVGIMVHAFQLLFIECDYPRAFVWWIGMHAVMFFFLFKDFYDQSY 132
Q++ I + F+L+FIE Y + + + +FLF F + Y
Sbjct: 1420 QLIFTAAIFIMNFKLVFIEMQYINIISIIVLVLTSLAWFLFNIFISEHY 1468
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.330 0.141 0.469
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 919,431
Number of Sequences: 5004
Number of extensions: 39245
Number of successful extensions: 109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 101
Number of HSP's gapped (non-prelim): 9
length of query: 185
length of database: 2,362,478
effective HSP length: 69
effective length of query: 116
effective length of database: 2,017,202
effective search space: 233995432
effective search space used: 233995432
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 51 (24.6 bits)
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