Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000424-TA|BGIBMGA000424-PA|IPR002076|GNS1/SUR4 membrane
protein
(185 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0821 - 27960414-27961253 38 0.006
01_05_0659 - 24061318-24061575,24061664-24061918,24062001-240621... 29 1.7
01_05_0658 - 24043655-24043945,24044003-24044257,24044359-240445... 29 1.7
01_06_0923 + 33044283-33044433,33044826-33045242,33046209-330465... 29 2.3
04_03_1036 - 21895764-21895817,21895928-21895975,21896051-218961... 28 4.0
01_06_0782 + 31969677-31969767,31969863-31969960,31970059-319702... 28 4.0
01_05_0783 + 25183361-25185628 28 4.0
11_06_0013 - 19252779-19252805,19252947-19253090,19253572-192536... 27 9.1
>03_05_0821 - 27960414-27961253
Length = 279
Score = 37.5 bits (83), Expect = 0.006
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 11/78 (14%)
Query: 16 VSTLHVIHHG-VMPMS-VWFGVK--FTPGGHSTFFGLLNTFVHIVMYTYYMLAAMGPHMR 71
++ LHV HH V+ M +W + P +T N VH+ MY YY+ ++G +R
Sbjct: 146 LTLLHVYHHAAVIAMCYLWLATRQSLMPIALAT-----NAAVHVAMYGYYLCCSLG--LR 198
Query: 72 KYLWWKKYLTTLQMVQFV 89
WK+ +T LQ+ QF+
Sbjct: 199 WPPRWKRAVTELQIAQFL 216
>01_05_0659 -
24061318-24061575,24061664-24061918,24062001-24062172,
24062258-24062381,24062442-24062485,24063601-24063734,
24063822-24063905,24064100-24064390,24064713-24065045,
24065145-24065389,24065644-24065910,24065997-24066157,
24066253-24066569,24066665-24066946,24067024-24067325,
24067398-24067488,24067796-24067849,24067963-24068039,
24068159-24068318,24068653-24068737,24069029-24069238,
24069344-24069732
Length = 1444
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 105 YPRAFVWWIGMHAVM-FFFLFKDFYDQSYSKPKVRAKSPQPELETTEIKE 153
+P A +WIG A++ F LF + + + K KS QP + E+KE
Sbjct: 766 FPEAKWYWIGFGALLGFIMLFNGLFTLALTYLKPYGKS-QPSVSEEELKE 814
>01_05_0658 -
24043655-24043945,24044003-24044257,24044359-24044530,
24044617-24044844,24045688-24045821,24045908-24045991,
24046202-24046492,24046571-24046903,24047002-24047246,
24047476-24047742,24048305-24048465,24048556-24048872,
24048966-24049247,24049325-24049626,24049699-24049789,
24049881-24049934,24050028-24050104,24050192-24050367,
24051331-24051540,24051626-24052029
Length = 1457
Score = 29.5 bits (63), Expect = 1.7
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 76 WKKYLTTLQMVQFVGIMVHAFQLLFIECDYPRAFVWWIGMHAVM-FFFLFKDFYDQSYSK 134
W K L + +G+ Q L +P A +WIG A++ F LF + + +
Sbjct: 724 WDKVLNNSLSNETLGV-----QALMSRGIFPEAKWYWIGFGALLGFIMLFNILFTLALTY 778
Query: 135 PKVRAKSPQPELETTEIKE 153
K KS QP + E+KE
Sbjct: 779 LKPDGKS-QPSISEEELKE 796
>01_06_0923 + 33044283-33044433,33044826-33045242,33046209-33046538,
33046806-33046876,33047283-33047357,33047435-33047578,
33047645-33047816,33047933-33048616,33048711-33048767,
33048850-33048956,33049485-33049610,33050221-33050295,
33050387-33050499,33050789-33050905,33051384-33051444,
33051690-33051763,33052267-33052388,33052472-33052620,
33053525-33053635,33053946-33054008,33054689-33054722,
33055253-33055375,33055971-33056033,33056130-33056196,
33056311-33056356,33056446-33056552,33056923-33056971,
33057208-33057273,33057544-33057630
Length = 1286
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 74 LWWKKYLTTLQMVQFVGIMVHAFQLLFIECDYPRAFVWWIGMHAVMF--FFLF 124
L+W TT ++ G+M+ +++ P A+V W A+ F FFLF
Sbjct: 1131 LFWNIIATTAAWIKGAGVMIWLLAIIYFISGVPGAYVLWT-ESALKFGWFFLF 1182
>04_03_1036 -
21895764-21895817,21895928-21895975,21896051-21896154,
21896624-21896721,21897838-21897916,21898039-21898102,
21898176-21898294,21898434-21898686,21899273-21899279,
21899956-21900013,21900300-21900353,21900863-21901055
Length = 376
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 125 KDFYDQSYSKPKVRAKSPQPELETTEIKELTYQNGSLKNGFNKIHTNGT 173
K F S +++ K Q LET ++K + Q+ ++++ K TNGT
Sbjct: 186 KKFAFVDVSPEELQQKELQSSLETVDVKSESKQSETMEDTEQKAPTNGT 234
>01_06_0782 +
31969677-31969767,31969863-31969960,31970059-31970235,
31970367-31970467,31970626-31970701,31970827-31970886,
31970979-31971215,31971612-31971686,31971981-31972039,
31972110-31972201,31972463-31972623,31972964-31973176
Length = 479
Score = 28.3 bits (60), Expect = 4.0
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 41 GHSTFFGLLNTFVHIVMYTYYMLAAMGPHMRKYLWWKKYLTTL-QMVQFVGIMVHAF--- 96
G S F GL V + Y M A GP K W+ Y+ T+ VG++V F
Sbjct: 378 GVSIFLGLS---VPEYFFRYSMAAQRGPAHTKAGWFNDYINTIFSSPPTVGLIVAVFLDN 434
Query: 97 QLLFIECDYPRAFVWWIGMHAVMFFFLFKDFYDQSYS 133
L R WW+ + ++FY ++
Sbjct: 435 TLEVKNAAKDRGMPWWVPFRSFKGDARSEEFYSLPFN 471
>01_05_0783 + 25183361-25185628
Length = 755
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 74 LWWKKYLTTLQMVQFVGIMVHAFQLLFIECDYPRAFVWW 112
LWWK+Y L G+ A L F R+ WW
Sbjct: 687 LWWKRYNYILSAALDAGVAFMAVLLYFSLSMENRSISWW 725
>11_06_0013 -
19252779-19252805,19252947-19253090,19253572-19253663,
19253757-19253835,19253965-19254031,19254163-19254254,
19254986-19255102,19255254-19255365,19255479-19255594,
19255680-19255756,19255912-19255993,19256077-19256214,
19258806-19259009
Length = 448
Score = 27.1 bits (57), Expect = 9.1
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 61 YMLAAMGPHMRKYLWWKKYLTTLQMVQFVGIMVHAFQLLFIECDYPRAFV--WWIGMHAV 118
+ L G HM K L+ Y T G+ A LL Y R + W+G HA+
Sbjct: 356 FSLHLFGLHMNKSLYSLSY--TCVTTGTAGLFFVAIYLLVDVKGYKRPVLPMEWMGKHAL 413
Query: 119 MFFFL 123
M F L
Sbjct: 414 MIFVL 418
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.330 0.141 0.469
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,640,162
Number of Sequences: 37544
Number of extensions: 225501
Number of successful extensions: 527
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 522
Number of HSP's gapped (non-prelim): 9
length of query: 185
length of database: 14,793,348
effective HSP length: 78
effective length of query: 107
effective length of database: 11,864,916
effective search space: 1269546012
effective search space used: 1269546012
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 57 (27.1 bits)
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