GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000424-TA|BGIBMGA000424-PA|IPR002076|GNS1/SUR4 membrane
protein
         (185 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7377| Best HMM Match : ELO (HMM E-Value=3.6e-06)                   126   8e-30
SB_7376| Best HMM Match : ELO (HMM E-Value=3.3e-07)                    85   4e-17
SB_43724| Best HMM Match : AMP-binding (HMM E-Value=2.6e-09)           29   2.3  
SB_13704| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_34303| Best HMM Match : Pkinase (HMM E-Value=0)                     28   4.1  
SB_12521| Best HMM Match : Sprouty (HMM E-Value=0.48)                  28   5.4  

>SB_7377| Best HMM Match : ELO (HMM E-Value=3.6e-06)
          Length = 255

 Score =  126 bits (305), Expect = 8e-30
 Identities = 62/134 (46%), Positives = 84/134 (62%), Gaps = 9/134 (6%)

Query: 3   LQIFFVLRKKFDHVSTLHVIHHGVMPMSVWFGVKFTPGGHSTFFGLLNTFVHIVMYTYYM 62
           L++FF+LRKK + +S LHV HH  M    W G+K+  GG S F  ++N F+HI+MY YY 
Sbjct: 84  LEMFFILRKKNNQISFLHVYHHFSMVCLWWVGIKWVAGGQSFFSAMINAFIHIIMYAYYG 143

Query: 63  LAAMGPHMRKYLWWKKYLTTLQMVQFVGIMVHAFQLLFIECDYPRAFVWW----IGMHAV 118
           L+A+ P MR YLWWKKYLT LQ+ QF  +M H    L+ +C   R F+W     IG + +
Sbjct: 144 LSAI-PEMRIYLWWKKYLTQLQLTQFCTVMAHGVLSLWAKC---RFFLWMQYALIG-YMI 198

Query: 119 MFFFLFKDFYDQSY 132
            F  LF +FY  +Y
Sbjct: 199 SFLILFSNFYLHAY 212


>SB_7376| Best HMM Match : ELO (HMM E-Value=3.3e-07)
          Length = 278

 Score = 84.6 bits (200), Expect = 4e-17
 Identities = 37/94 (39%), Positives = 60/94 (63%), Gaps = 2/94 (2%)

Query: 43  STFFGLL-NTFVHIVMYTYYMLAAMGPHMRKYLWWKKYLTTLQMVQFVGIMVHAFQLLFI 101
           + +FG   N+F+H++MY YY L+AMGP ++KYLWWK+YLT +Q++QF+ ++  A   L+ 
Sbjct: 179 TAYFGAACNSFIHVIMYLYYGLSAMGPSVQKYLWWKRYLTKMQLIQFLALIYMAVYALWH 238

Query: 102 E-CDYPRAFVWWIGMHAVMFFFLFKDFYDQSYSK 134
           + C   + F W    + +    LF +FY  +Y K
Sbjct: 239 DGCGTHKFFQWVQFGYGMSLLVLFSNFYLHTYLK 272


>SB_43724| Best HMM Match : AMP-binding (HMM E-Value=2.6e-09)
          Length = 490

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/48 (22%), Positives = 25/48 (52%)

Query: 52  FVHIVMYTYYMLAAMGPHMRKYLWWKKYLTTLQMVQFVGIMVHAFQLL 99
           F+ +++Y  Y+    G   ++ L +K+YL   +  +++   +H   LL
Sbjct: 425 FIEVLLYNIYLHGPEGVRYKEALIYKRYLPCPEGARYLDDFIHVVMLL 472


>SB_13704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 103 CDYPRAFVWWIGMHAVMFFFLFKDFYDQSYSKPKVRAKSPQPELETTEIKELTYQNGS 160
           C Y   FV W    + MF  +  D+Y        ++ K  Q E+    I+E+ Y++G+
Sbjct: 12  CGYKEFFVTWDKQESAMFVCIVMDYYKFGDLDRCLKQKRKQKEV----IEEMIYKSGN 65


>SB_34303| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 226

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%)

Query: 142 PQPELETTEIKELTYQNGSLKNGFNKIHTNGTMPR 176
           PQP L   +IK+LTYQ   + NG + +HT+  + R
Sbjct: 106 PQPGLGEWKIKDLTYQ---ILNGVDFLHTHRIVHR 137


>SB_12521| Best HMM Match : Sprouty (HMM E-Value=0.48)
          Length = 314

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 126 DFYDQSYSKPKVRAKSPQPELETTEIKELTYQNGSLKNGFNKIHTNGTM--PRARTV 180
           D YD    K   +  +P P +  ++ +  T+ + S  N F K HT G +    ARTV
Sbjct: 54  DEYDYCILKAATKGSNPLPRILPSDREIRTHISSSSYNTFAKRHTGGPVYSVSARTV 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.330    0.141    0.469 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,438,647
Number of Sequences: 59808
Number of extensions: 254724
Number of successful extensions: 607
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 602
Number of HSP's gapped (non-prelim): 6
length of query: 185
length of database: 16,821,457
effective HSP length: 78
effective length of query: 107
effective length of database: 12,156,433
effective search space: 1300738331
effective search space used: 1300738331
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 57 (27.1 bits)