GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000424-TA|BGIBMGA000424-PA|IPR002076|GNS1/SUR4 membrane
protein
         (185 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   1.4  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   4.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.2  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   7.3  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 133 SKPKVRAKSPQPELETTEIKEL 154
           S PK R K+PQP+     + EL
Sbjct: 23  SSPKKRNKNPQPKNAVCALNEL 44


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 105 YPRAFVWWIGMHAVMFFFLFKDFYDQSYSKPKVRAKSPQPELETTEIKELTYQNGSLKN 163
           Y +A   ++ M  V  F    ++   +Y+    RAK    + E+ + K ++ ++GS  N
Sbjct: 300 YVKAIDIYLVMCFVFVFAALLEYAAVNYTYWGARAKKKSKKKESDDKKVISSKSGSKAN 358


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 7/19 (36%), Positives = 15/19 (78%)

Query: 43  STFFGLLNTFVHIVMYTYY 61
           +++ G +N+FV+ V+YT +
Sbjct: 662 TSWLGYMNSFVNPVIYTVF 680


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 136 KVRAKSPQPELETTEIKELTYQNGSLKNGFNK 167
           K R +S +P++ ++      Y N +  N +NK
Sbjct: 71  KERERSKEPKIISSLSNNYKYSNYNNYNNYNK 102


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.330    0.141    0.469 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,878
Number of Sequences: 429
Number of extensions: 2449
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 185
length of database: 140,377
effective HSP length: 54
effective length of query: 131
effective length of database: 117,211
effective search space: 15354641
effective search space used: 15354641
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 41 (20.6 bits)