GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000423-TA|BGIBMGA000423-PA|IPR000771|Ketose-bisphosphate
aldolase, class-II
         (65 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81497-2|CAB04078.1|  781|Caenorhabditis elegans Hypothetical pr...    28   0.71 
Z46934-12|CAA87044.3|  539|Caenorhabditis elegans Hypothetical p...    27   2.2  
Z14148-2|CAA78521.1|  679|Caenorhabditis elegans hypothetical po...    26   2.8  
Z14148-1|CAA78520.1|  854|Caenorhabditis elegans hypothetical po...    26   2.8  
Z14146-2|CAA78517.1|  679|Caenorhabditis elegans hypothetical pr...    26   2.8  
Z14146-1|CAA78516.1|  854|Caenorhabditis elegans unc-33 protein.       26   2.8  
AC006737-1|AAM97965.1|  854|Caenorhabditis elegans Uncoordinated...    26   2.8  
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    26   3.8  
Z77659-7|CAB01167.1|  401|Caenorhabditis elegans Hypothetical pr...    25   5.0  
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr...    25   5.0  
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr...    25   5.0  
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll...    25   5.0  
AC024805-10|AAK39342.3| 1058|Caenorhabditis elegans Hypothetical...    25   5.0  
AC006630-5|AAK68323.1|  335|Caenorhabditis elegans Collagen prot...    25   8.7  

>Z81497-2|CAB04078.1|  781|Caenorhabditis elegans Hypothetical
           protein F10C2.5 protein.
          Length = 781

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 8   EEEMGVNGAREGDIR---GDNSNGGNEVREGEIGRNGELVEFE 47
           ++E+GV     GD          GG +  E + G+N  L+EFE
Sbjct: 505 DQEVGVKQVNNGDEHEKMNRTEKGGEKYFENQYGKNENLIEFE 547


>Z46934-12|CAA87044.3|  539|Caenorhabditis elegans Hypothetical
           protein ZK1320.6 protein.
          Length = 539

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/27 (33%), Positives = 20/27 (74%)

Query: 35  GEIGRNGELVEFEKVILEEIILMECNE 61
           G + ++GE+V+F++   E ++ +EC+E
Sbjct: 84  GLLEKSGEVVKFDRYSKERLLNLECDE 110


>Z14148-2|CAA78521.1|  679|Caenorhabditis elegans hypothetical
           polypeptide II protein.
          Length = 679

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/53 (22%), Positives = 25/53 (47%)

Query: 4   EKVLEEEMGVNGAREGDIRGDNSNGGNEVREGEIGRNGELVEFEKVILEEIIL 56
           E+  + E     A E    GD+ NGG       + +N ++V  + + + +I++
Sbjct: 128 EETADGESSAQSAAEKKNSGDDGNGGGGEMSILLVKNAQIVNDDAIFVADILI 180


>Z14148-1|CAA78520.1|  854|Caenorhabditis elegans hypothetical
           polypeptide I protein.
          Length = 854

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/53 (22%), Positives = 25/53 (47%)

Query: 4   EKVLEEEMGVNGAREGDIRGDNSNGGNEVREGEIGRNGELVEFEKVILEEIIL 56
           E+  + E     A E    GD+ NGG       + +N ++V  + + + +I++
Sbjct: 303 EETADGESSAQSAAEKKNSGDDGNGGGGEMSILLVKNAQIVNDDAIFVADILI 355


>Z14146-2|CAA78517.1|  679|Caenorhabditis elegans hypothetical
           protein.
          Length = 679

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/53 (22%), Positives = 25/53 (47%)

Query: 4   EKVLEEEMGVNGAREGDIRGDNSNGGNEVREGEIGRNGELVEFEKVILEEIIL 56
           E+  + E     A E    GD+ NGG       + +N ++V  + + + +I++
Sbjct: 128 EETADGESSAQSAAEKKNSGDDGNGGGGEMSILLVKNAQIVNDDAIFVADILI 180


>Z14146-1|CAA78516.1|  854|Caenorhabditis elegans unc-33 protein.
          Length = 854

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/53 (22%), Positives = 25/53 (47%)

Query: 4   EKVLEEEMGVNGAREGDIRGDNSNGGNEVREGEIGRNGELVEFEKVILEEIIL 56
           E+  + E     A E    GD+ NGG       + +N ++V  + + + +I++
Sbjct: 303 EETADGESSAQSAAEKKNSGDDGNGGGGEMSILLVKNAQIVNDDAIFVADILI 355


>AC006737-1|AAM97965.1|  854|Caenorhabditis elegans Uncoordinated
           protein 33 protein.
          Length = 854

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/53 (22%), Positives = 25/53 (47%)

Query: 4   EKVLEEEMGVNGAREGDIRGDNSNGGNEVREGEIGRNGELVEFEKVILEEIIL 56
           E+  + E     A E    GD+ NGG       + +N ++V  + + + +I++
Sbjct: 303 EETADGESSAQSAAEKKNSGDDGNGGGGEMSILLVKNAQIVNDDAIFVADILI 355


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 2    KFEKVLEEEMGVNGAREGD 20
            K  KV E+E GVNG R+ D
Sbjct: 1467 KIFKVTEDEAGVNGDRDSD 1485


>Z77659-7|CAB01167.1|  401|Caenorhabditis elegans Hypothetical
           protein F23B12.6 protein.
          Length = 401

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)

Query: 34  EGEIGRNGELVE---FEKVILEEIILMECNEV 62
           +GE+ R G  +E   FE  +LEE IL+ C  V
Sbjct: 300 DGEMEREGRSLEKGLFEARMLEEYILVGCQSV 331


>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical
           protein K04H4.1b protein.
          Length = 1502

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 23  GDNSNGGNEVREGEIGRNGE 42
           G+N + GN+ R+G+ G  GE
Sbjct: 961 GENGDNGNQGRDGQPGLRGE 980


>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
            K04H4.1a protein.
          Length = 1759

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 23   GDNSNGGNEVREGEIGRNGE 42
            G+N + GN+ R+G+ G  GE
Sbjct: 1218 GENGDNGNQGRDGQPGLRGE 1237


>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
            protein.
          Length = 1758

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 23   GDNSNGGNEVREGEIGRNGE 42
            G+N + GN+ R+G+ G  GE
Sbjct: 1217 GENGDNGNQGRDGQPGLRGE 1236


>AC024805-10|AAK39342.3| 1058|Caenorhabditis elegans Hypothetical
           protein Y51H7C.11 protein.
          Length = 1058

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 32  VREGEIGRNGELVEFEKVILEEIILMECNEVE 63
           V+ G+I  N E++   +VI E+ I    ++VE
Sbjct: 269 VKNGKITENQEILTVLRVIFEDFITWSADDVE 300


>AC006630-5|AAK68323.1|  335|Caenorhabditis elegans Collagen protein
           165 protein.
          Length = 335

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 12/33 (36%), Positives = 14/33 (42%)

Query: 10  EMGVNGAREGDIRGDNSNGGNEVREGEIGRNGE 42
           E G  G R   I G     G+  R+G  G  GE
Sbjct: 275 ESGPKGRRGNTIPGPQGPNGDAGRKGRAGHKGE 307


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.310    0.138    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,682,379
Number of Sequences: 27539
Number of extensions: 60923
Number of successful extensions: 179
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 163
Number of HSP's gapped (non-prelim): 17
length of query: 65
length of database: 12,573,161
effective HSP length: 45
effective length of query: 20
effective length of database: 11,333,906
effective search space: 226678120
effective search space used: 226678120
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 51 (24.6 bits)