Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000422-TA|BGIBMGA000422-PA|IPR002076|GNS1/SUR4 membrane
protein
         (343 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    27   0.20 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    26   0.46 
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    24   1.4  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    23   3.2  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   4.3  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   4.3  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   5.7  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   5.7  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   5.7  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    22   5.7  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   5.7  
AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax pr...    22   5.7  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   5.7  

>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory
          receptor candidate 27 protein.
          Length = 346

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 32 FELRNILVVYNMAQTIFSAWI 52
          + L  I VV++ A T FSAWI
Sbjct: 30 YRLYKIFVVFSFAVTFFSAWI 50


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 98   FMDTLFFVLRKKNEHVSTLHVIHHGIMPMSVWFGLKFAPGGHST 141
            F DT F        H+S +H +  G++P  V   LK A  G S+
Sbjct: 1058 FCDTPFISKGAYRHHLSKMHFVKDGVIPDPV--ALKSAQQGSSS 1099


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 221 LFSDFYKARYTTAERKSKAQNGL 243
           L  +FY +RY T  RK++  N L
Sbjct: 171 LEKEFYYSRYITIRRKAELANSL 193


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 243 LCMAVMDDSSSSLNGRNGYKQEMGSEVP 270
           +C+ +   S SSL  R+  K   G   P
Sbjct: 226 ICIEIWQSSESSLRPRSSQKSAPGKRTP 253


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 15/61 (24%), Positives = 25/61 (40%)

Query: 219 LFLFSDFYKARYTTAERKSKAQNGLCMAVMDDSSSSLNGRNGYKQEMGSEVPSSYASSGA 278
           L L  +F+  RY T  R+ +  + LC+          N R  +K+E  ++        G 
Sbjct: 255 LELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKTKGEGGSEGGGD 314

Query: 279 D 279
           D
Sbjct: 315 D 315


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 15/61 (24%), Positives = 25/61 (40%)

Query: 219 LFLFSDFYKARYTTAERKSKAQNGLCMAVMDDSSSSLNGRNGYKQEMGSEVPSSYASSGA 278
           L L  +F+  RY T  R+ +  + LC+          N R  +K+E  ++        G 
Sbjct: 257 LELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKTKGEGGSEGGGD 316

Query: 279 D 279
           D
Sbjct: 317 D 317


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 219 LFLFSDFYKARYTTAERKSKAQNGLCMAVMDDSSSSLNGRNGYKQE 264
           L L  +F+  RY T  R+ +  + LC+          N R  +K+E
Sbjct: 233 LELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 278


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 219 LFLFSDFYKARYTTAERKSKAQNGLCMAVMDDSSSSLNGRNGYKQE 264
           L L  +F+  RY T  R+ +  + LC+          N R  +K+E
Sbjct: 233 LELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 278


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 219 LFLFSDFYKARYTTAERKSKAQNGLCMAVMDDSSSSLNGRNGYKQE 264
           L L  +F+  RY T  R+ +  + LC+          N R  +K+E
Sbjct: 233 LELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 278


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 219 LFLFSDFYKARYTTAERKSKAQNGLCMAVMDDSSSSLNGRNGYKQE 264
           L L  +F+  RY T  R+ +  + LC+          N R  +K+E
Sbjct: 189 LELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 234


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 219 LFLFSDFYKARYTTAERKSKAQNGLCMAVMDDSSSSLNGRNGYKQE 264
           L L  +F+  RY T  R+ +  + LC+          N R  +K+E
Sbjct: 233 LELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 278


>AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax
           protein.
          Length = 100

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 219 LFLFSDFYKARYTTAERKSKAQNGLCMAVMDDSSSSLNGRNGYKQE 264
           L L  +F+  RY T  R+ +  + LC+          N R  +K+E
Sbjct: 21  LELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 66


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 219 LFLFSDFYKARYTTAERKSKAQNGLCMAVMDDSSSSLNGRNGYKQE 264
           L L  +F+  RY T  R+ +  + LC+          N R  +K+E
Sbjct: 233 LELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 278


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.328    0.137    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,120
Number of Sequences: 317
Number of extensions: 3904
Number of successful extensions: 19
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 13
length of query: 343
length of database: 114,650
effective HSP length: 57
effective length of query: 286
effective length of database: 96,581
effective search space: 27622166
effective search space used: 27622166
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 43 (21.4 bits)