Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000422-TA|BGIBMGA000422-PA|IPR002076|GNS1/SUR4 membrane
protein
(343 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb... 88 2e-18
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha... 81 2e-16
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 32 0.10
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 27 3.9
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|... 27 5.1
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 27 5.1
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch... 26 6.8
>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 87.8 bits (208), Expect = 2e-18
Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 17/190 (8%)
Query: 3 SPWPTLAACVCYAYCAKELGPKLMANRKPFELRNILVVYNMAQTIFSAWIF---YEYLMS 59
S W ++ + Y G +M NRKP + R + ++N TI S + E +
Sbjct: 53 SQWSSVIVSITAYYVIILSGRAIMTNRKPLKQRRLFQLHNFILTIISGALLALLVEEVFR 112
Query: 60 GWWGHYDFRCQLVDYSRSPMAMRMANTCWWYYFSKFTEFMDTLFFVLRKKNEHVSTLHVI 119
+ + F C V SR R+ + Y +K+ E MDT+F L+KK ++ LH
Sbjct: 113 NYMRNGLFYC--VCDSRH-FTQRLVTLYYLNYLTKYLELMDTVFLFLKKKP--LAFLHCY 167
Query: 120 HHGIMPMSVWFGLKFAPGGHSTFFAL--LNTFVHIVMYFYYMVAAMGPKYQKYIWWKKYL 177
HHGI + + L G S + + LN +VH++MY YY +AA G + +WWK+++
Sbjct: 168 HHGITALLCFTQLL---GRTSVQWGVIGLNLYVHVIMYSYYFLAACG----RRVWWKQWV 220
Query: 178 TAFQMVQFVL 187
T Q++QFVL
Sbjct: 221 TRVQIIQFVL 230
>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 81.4 bits (192), Expect = 2e-16
Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 13/183 (7%)
Query: 6 PTLAACVCYAYCAKELGPKLMANRKPFELRNILVVYNMAQTIFS---AWIFYEYLMSGWW 62
P +A + Y +G ++M NR+P L+ I YN+ +I S A + +E + +
Sbjct: 36 PVVATIIISYYLLILVGGRIMRNRQPIRLQKIFQYYNLTFSIASAILALLIFEQVAPAIY 95
Query: 63 GHYDFRCQLVDYSRSPMAMRMANTCWWYYFSKFTEFMDTLFFVLRKKNEHVSTLHVIHHG 122
H F + + + C Y SKF E DT F VLRKK + LH HHG
Sbjct: 96 KH-GFFFSICNEKAWTQPLVFLYYC--AYISKFLELTDTFFLVLRKK--PLQFLHCYHHG 150
Query: 123 IMPMSVWFGLKFAPGGHSTFFALLNTFVHIVMYFYYMVAAMGPKYQKYIWWKKYLTAFQM 182
+ V+ + S +N VH+ MY+YY + A G + + WKK++T FQ+
Sbjct: 151 ATAVLVYTQI-VGRTSISWLIIEINLLVHVTMYYYYYLVAKGIR----VPWKKWVTRFQI 205
Query: 183 VQF 185
VQF
Sbjct: 206 VQF 208
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 32.3 bits (70), Expect = 0.10
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 256 NGRNGYKQEMGSEVPSSYASSGADALSFDVNKTERDTQIISFTVNKPK 303
N N + + S+VP Y+ S A+A FD+N T++++F ++ P+
Sbjct: 96 NTANAFVNSISSDVPFDYSESVAEACGFDLN-----TRVLAFKLDAPE 138
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 27.1 bits (57), Expect = 3.9
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 234 ERKSKAQNGLCMAVMDDSSSSLN-GRNGYKQEMGSEVPSSYASSGADALSFDVNKTERDT 292
ER+ + VMD++ L+ G ++ S +PSS AS ++ N +
Sbjct: 391 ERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILATANSSSSRR 450
Query: 293 QIISFTVNKPKRVTQI 308
Q I F+ P RV +
Sbjct: 451 QTIMFSATLPPRVANL 466
>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 104
Score = 26.6 bits (56), Expect = 5.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 14 YAYCAKELGPKLMANRKPFELRNILVVYNMAQTIFSAWI 52
+A A P + + F L+NI+V+ N ++ AWI
Sbjct: 12 FAVFASSDKPNNCSRKNMFFLKNIIVLSNYLYLLYKAWI 50
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 26.6 bits (56), Expect = 5.1
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 38 LVVYNMAQTIFSAWIFYEYLMSGWWGHYDFRCQLVDYSRSPMAMRMANTCWWYYFSKFTE 97
LVV ++A FS I Y ++ W G D + +++ P A+R+ + ++ F ++ +
Sbjct: 191 LVVVSLAYVSFS--IIYALFLNPWTGSLDPFKSIFNFNMDPDALRL-TSLGFFDFVQYLQ 247
Query: 98 F 98
F
Sbjct: 248 F 248
>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 370
Score = 26.2 bits (55), Expect = 6.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 48 FSAWIFYEYLMSGWWGHYDFRCQL 71
F+ +IFYEYL W ++ C L
Sbjct: 4 FNDYIFYEYLKKTNWNIHNLYCNL 27
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.328 0.137 0.448
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,591,005
Number of Sequences: 5004
Number of extensions: 66750
Number of successful extensions: 223
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 211
Number of HSP's gapped (non-prelim): 7
length of query: 343
length of database: 2,362,478
effective HSP length: 73
effective length of query: 270
effective length of database: 1,997,186
effective search space: 539240220
effective search space used: 539240220
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 54 (25.8 bits)
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