Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000422-TA|BGIBMGA000422-PA|IPR002076|GNS1/SUR4 membrane
protein
(343 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7377| Best HMM Match : ELO (HMM E-Value=3.6e-06) 122 6e-28
SB_7376| Best HMM Match : ELO (HMM E-Value=3.3e-07) 96 4e-20
SB_3707| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 0.001
SB_3799| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_4954| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.063
SB_14072| Best HMM Match : ELO (HMM E-Value=5.7) 32 0.59
SB_8858| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 30 2.4
SB_786| Best HMM Match : EGF (HMM E-Value=0) 30 2.4
SB_4955| Best HMM Match : rve (HMM E-Value=7.5e-09) 30 2.4
SB_43724| Best HMM Match : AMP-binding (HMM E-Value=2.6e-09) 29 7.3
SB_2463| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
>SB_7377| Best HMM Match : ELO (HMM E-Value=3.6e-06)
Length = 255
Score = 122 bits (293), Expect = 6e-28
Identities = 65/169 (38%), Positives = 94/169 (55%), Gaps = 6/169 (3%)
Query: 102 LFFVLRKKNEHVSTLHVIHHGIMPMSVWFGLKFAPGGHSTFFALLNTFVHIVMYFYYMVA 161
+FF+LRKKN +S LHV HH M W G+K+ GG S F A++N F+HI+MY YY ++
Sbjct: 86 MFFILRKKNNQISFLHVYHHFSMVCLWWVGIKWVAGGQSFFSAMINAFIHIIMYAYYGLS 145
Query: 162 AMGPKYQKYIWWKKYLTAFQMVQFVLIFSHQLQVLFRPSCQYPRVFVYWIAMHGFLFLFL 221
A+ P+ + Y+WWKKYLT Q+ QF + +H + L+ C++ Y + + FL L
Sbjct: 146 AI-PEMRIYLWWKKYLTQLQLTQFCTVMAHGVLSLW-AKCRFFLWMQYALIGYMISFLIL 203
Query: 222 FSDFYKARYTTAERKSKAQNGLCMAVMDDSSSSLNGRNGYKQEMGSEVP 270
FS+FY Y T RK N A+ + + G KQ G + P
Sbjct: 204 FSNFYLHAYLT--RKQSCPNK--DAMQANGETPFCPDKGAKQANGVDTP 248
Score = 37.1 bits (82), Expect = 0.021
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 14 YAYCAKEL-GPKLMANRKPFELRNILVVYNMAQTIFSAWIFYE 55
+AY L GP LM N+K F L+ I+V+YN ++ + +IF E
Sbjct: 43 FAYILAVLTGPHLMKNKKAFNLQWIMVIYNGMMSLLNLYIFLE 85
>SB_7376| Best HMM Match : ELO (HMM E-Value=3.3e-07)
Length = 278
Score = 95.9 bits (228), Expect = 4e-20
Identities = 63/209 (30%), Positives = 100/209 (47%), Gaps = 36/209 (17%)
Query: 36 NILVVYNMAQ----TIFSAWIFYEYLMSGWW-GHYDFRCQLVDYSRSPMAMRMANTCWWY 90
N ++ Y++ Q T+F ++E++ S ++ CQ V Y P MR+A C+ Y
Sbjct: 100 NAILFYSIWQIHYLTLFVVDGYFEFIASILSIPEFNLMCQDVSYEEDPRLMRLARVCYIY 159
Query: 91 YFSKFTEFMDTLFFVLRKKNEHVSTLHVIHHGIMPMSVWFGLKFAPGGHSTFFALLNTFV 150
Y SKF E+ T V+ + + +FG A N+F+
Sbjct: 160 YLSKFV--------------EYFDTYVVV---AVVFTAYFG------------AACNSFI 190
Query: 151 HIVMYFYYMVAAMGPKYQKYIWWKKYLTAFQMVQFVLIFSHQLQVLFRPSCQYPRVFVYW 210
H++MY YY ++AMGP QKY+WWK+YLT Q++QF+ + + L+ C + F W
Sbjct: 191 HVIMYLYYGLSAMGPSVQKYLWWKRYLTKMQLIQFLALIYMAVYALWHDGCGTHK-FFQW 249
Query: 211 IAM-HGFLFLFLFSDFYKARYTTAERKSK 238
+ +G L LFS+FY Y K +
Sbjct: 250 VQFGYGMSLLVLFSNFYLHTYLKKPSKKE 278
Score = 58.4 bits (135), Expect = 8e-09
Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 1 MSSPWPTLAACVCYAYCAKELGPKLMANRKPFELRNILVVYNMAQTIFSAWIFYE 55
+++PWP L+ Y + K +GPK M NRK ++LR +LVVYN A + SA++ YE
Sbjct: 28 IATPWPCLSLMAMYLFIVK-VGPKFMENRKAWDLRGVLVVYNFALVLLSAYMVYE 81
>SB_3707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 89
Score = 41.5 bits (93), Expect = 0.001
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 283 FDVNKTERDTQIISFTVNKPKRVTQIISFDVNKAK-RVPHISFDVNEPKRVTQIISFDVN 341
FD K + DT+ + F K K T+ + FD KAK + FD + K TQ + FD
Sbjct: 3 FDTKKVKFDTKKVKFDTEKVKFDTEKVKFDTEKAKFDTEKVKFDTQKVKFDTQKVKFDTQ 62
Query: 342 KL 343
K+
Sbjct: 63 KV 64
Score = 40.7 bits (91), Expect = 0.002
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 281 LSFDVNKTERDTQIISFTVNKPKRVTQIISFDVNKAK-RVPHISFDVNEPKRVTQIISFD 339
+ FD K + DT+ + F K K T+ + FD K K + FD + K TQ + FD
Sbjct: 15 VKFDTEKVKFDTEKVKFDTEKAKFDTEKVKFDTQKVKFDTQKVKFDTQKVKFDTQKVKFD 74
Query: 340 VNK 342
K
Sbjct: 75 TQK 77
Score = 39.1 bits (87), Expect = 0.005
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 281 LSFDVNKTERDTQIISFTVNKPKRVTQIISFDVNKAK-RVPHISFDVNEPKRVTQIISFD 339
+ FD K + DT+ + F K K T+ FD K K + FD + K TQ + FD
Sbjct: 8 VKFDTKKVKFDTEKVKFDTEKVKFDTEKAKFDTEKVKFDTQKVKFDTQKVKFDTQKVKFD 67
Query: 340 VNKL 343
K+
Sbjct: 68 TQKV 71
Score = 38.7 bits (86), Expect = 0.007
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 279 DALSFDVNKTERDTQIISFTVNKPKRVTQIISFDVNKAK-RVPHISFDVNEPKRVTQIIS 337
+ + FD K + DT+ F K K TQ + FD K K + FD + K TQ
Sbjct: 20 EKVKFDTEKVKFDTEKAKFDTEKVKFDTQKVKFDTQKVKFDTQKVKFDTQKVKFDTQKAK 79
Query: 338 FDVNK 342
FD K
Sbjct: 80 FDTQK 84
Score = 38.7 bits (86), Expect = 0.007
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 279 DALSFDVNKTERDTQIISFTVNKPKRVTQIISFDVNKAK-RVPHISFDVNEPKRVTQIIS 337
+ + FD K + DT+ + F K K TQ + FD K K + FD + K TQ
Sbjct: 27 EKVKFDTEKAKFDTEKVKFDTQKVKFDTQKVKFDTQKVKFDTQKVKFDTQKAKFDTQKAK 86
Query: 338 FD 339
FD
Sbjct: 87 FD 88
Score = 35.1 bits (77), Expect = 0.084
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 274 ASSGADALSFDVNKTERDTQIISFTVNKPKRVTQIISFDVNKAK 317
A + + FD K + DTQ + F K K TQ + FD KAK
Sbjct: 36 AKFDTEKVKFDTQKVKFDTQKVKFDTQKVKFDTQKVKFDTQKAK 79
>SB_3799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 39.9 bits (89), Expect = 0.003
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 12/88 (13%)
Query: 34 LRNILVVYNMAQTIFSAW-IFYE--YLMSGWWGHYDFRCQLVDYSRSPMAMRMANTCWWY 90
LR +++ YN+ I SA+ + Y L+ GW H F L +R+ A+ + Y
Sbjct: 58 LRKLMIAYNLLCAILSAYSVLYAGVALVEGW-PHSLFDLTLD--TRAQHALHV------Y 108
Query: 91 YFSKFTEFMDTLFFVLRKKNEHVSTLHV 118
+ +K E MDT+F +LR K +S LHV
Sbjct: 109 WLTKKIELMDTVFMILRPKTRQMSFLHV 136
>SB_4954| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 35.5 bits (78), Expect = 0.063
Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 281 LSFDVNKTERDTQIISFTVNKPKRVTQIISFDVNKAKRV-PHISFDVNEPKRVTQIISFD 339
+S+DV + ++S+ V +PK + ++S+DV + K + IS+DV PK + ++S+D
Sbjct: 94 MSYDVPGPKIIMVMMSYDVPRPKIIMVMMSYDVPRPKIILVMISYDVPCPKIIMVMMSYD 153
Query: 340 V 340
V
Sbjct: 154 V 154
Score = 31.5 bits (68), Expect = 1.0
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 281 LSFDVNKTERDTQIISFTVNKPKRVTQIISFDVNKAKRV-PHISFDVNEPKRVTQIIS 337
+S+DV + + ++S+ V +PK + +IS+DV K + +S+DV PK + ++S
Sbjct: 108 MSYDVPRPKIIMVMMSYDVPRPKIILVMISYDVPCPKIIMVMMSYDVPRPKIIMVMMS 165
>SB_14072| Best HMM Match : ELO (HMM E-Value=5.7)
Length = 226
Score = 32.3 bits (70), Expect = 0.59
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 37 ILVVYNMAQTIFSAWIFYEYLMSGWWGHYDFRCQLVDYSRSPMAMRMANTCWWYYFSKFT 96
+LV+YN+ ++ S Y +++ HY + + R + + Y+ +K
Sbjct: 108 VLVLYNLLCSVLS---LYSFVIIA--KHY-VQNGVESLFRMEVNQSIKQALLVYWATKNI 161
Query: 97 EFMDTLFFVLRKKNEHVSTLHVI 119
E +DT+F +LR + +S LH+I
Sbjct: 162 ELLDTVFMILRHRQRQISFLHLI 184
>SB_8858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 886
Score = 31.1 bits (67), Expect = 1.4
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 290 RDTQIISFTVNKPKRVTQIISFD-VNKAKRVPHISFDVNEPKRVTQIISF 338
R TQ++ FT P R TQ+I F N + I F P R TQ+I F
Sbjct: 185 RYTQLMVFTRYNPVRYTQLIVFTRYNPVRYTQLIVFTRYNPVRYTQLIVF 234
Score = 29.1 bits (62), Expect = 5.5
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 290 RDTQIISFTVNKPKRVTQIISFD-VNKAKRVPHISFDVNEPKRVTQIISF 338
R TQ+I FT P R TQ+I F N + I F P R Q++ F
Sbjct: 199 RYTQLIVFTRYNPVRYTQLIVFTRYNPVRYTQLIVFTRYNPVRYAQLMVF 248
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 30.3 bits (65), Expect = 2.4
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 250 DSSSSLNGRNGYKQEMGSEVPSSYASSGADALSFDVNKTERDTQIISFTVNKPKRVTQII 309
D+SS LN + + E+G E +S+ DALS + Q + + PKRVT ++
Sbjct: 939 DTSSVLNAKPRSRPELGGENLVKISSTSLDALS-------KSRQKVMYAHEPPKRVTPVV 991
Query: 310 SFDVNKAKRVP 320
+K P
Sbjct: 992 EGRSSKGDDSP 1002
>SB_786| Best HMM Match : EGF (HMM E-Value=0)
Length = 1427
Score = 30.3 bits (65), Expect = 2.4
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 45 QTIFSAWIFYEYLMSGWWGHYDFRCQLVDYSRSPMAMRMANTCWWYYFSKFTEFMDTLFF 104
QTIFS + L G W DYSR+ + A T +YFS F+D +
Sbjct: 639 QTIFSV-LTPPVLTEGKWTQVTVTYSS-DYSRARTIVTKATTLLLFYFSSSLIFVDDIII 696
Query: 105 VLRKKNEHVSTL 116
+ K N+ + L
Sbjct: 697 ISVKDNDLLKLL 708
>SB_4955| Best HMM Match : rve (HMM E-Value=7.5e-09)
Length = 667
Score = 30.3 bits (65), Expect = 2.4
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 281 LSFDVNKTERDTQIISFTVNKPKRVTQIISFDVNKAKRV-PHISFDVNEPKRVTQIISFD 339
+S+DV + +SF + PK + +S+DV + K + +S+DV P + ++S+D
Sbjct: 4 MSYDVPGPKIIMVTMSFDIPGPKIIMVTMSYDVPRPKIIMVMMSYDVPGPNIIMVMMSYD 63
Query: 340 V 340
+
Sbjct: 64 I 64
Score = 29.5 bits (63), Expect = 4.2
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 281 LSFDVNKTERDTQIISFTVNKPKRVTQIISFDVNKAKRV-PHISFDVNEPKRVTQIISFD 339
+SFD+ + +S+ V +PK + ++S+DV + +S+D+ PK + +S+D
Sbjct: 18 MSFDIPGPKIIMVTMSYDVPRPKIIMVMMSYDVPGPNIIMVMMSYDIPCPKIIMVTMSYD 77
Query: 340 V 340
V
Sbjct: 78 V 78
Score = 28.7 bits (61), Expect = 7.3
Identities = 15/61 (24%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 281 LSFDVNKTERDTQIISFTVNKPKRVTQIISFDVNKAKRV-PHISFDVNEPKRVTQIISFD 339
+S+DV + + ++ + V PK + ++S+D+ K + +S+D+ PK + ++ +D
Sbjct: 74 MSYDVPRPKIIMVMMIYNVPGPKIIMVMMSYDIPCPKIIMVMMSYDIPGPKIIMVMMGYD 133
Query: 340 V 340
V
Sbjct: 134 V 134
>SB_43724| Best HMM Match : AMP-binding (HMM E-Value=2.6e-09)
Length = 490
Score = 28.7 bits (61), Expect = 7.3
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 149 FVHIVMYFYYMVAAMGPKYQKYIWWKKYLTAFQMVQFVLIFSHQLQVL 196
F+ +++Y Y+ G +Y++ + +K+YL + +++ F H + +L
Sbjct: 425 FIEVLLYNIYLHGPEGVRYKEALIYKRYLPCPEGARYLDDFIHVVMLL 472
>SB_2463| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 28.3 bits (60), Expect = 9.6
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 133 KFAPGGHSTFFALLNTF---VHIVMYFYYMVAAMGPKYQKYIW 172
K+ G STFF L+ +F H + +Y++A KY + W
Sbjct: 195 KYLEYGASTFFLLMLSFCLVAHWMACMFYVIATKYDKYDVHCW 237
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.328 0.137 0.448
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,063,962
Number of Sequences: 59808
Number of extensions: 438642
Number of successful extensions: 1230
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1184
Number of HSP's gapped (non-prelim): 31
length of query: 343
length of database: 16,821,457
effective HSP length: 83
effective length of query: 260
effective length of database: 11,857,393
effective search space: 3082922180
effective search space used: 3082922180
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 60 (28.3 bits)
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