GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000422-TA|BGIBMGA000422-PA|IPR002076|GNS1/SUR4 membrane
protein
         (343 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0821 - 27960414-27961253                                         58   1e-08
06_01_0175 - 1371089-1371706,1371812-1371994,1372069-1372324,137...    30   3.1  
06_01_0173 - 1364219-1364836,1364941-1365123,1365215-1365470,136...    29   5.4  
06_03_0992 - 26680555-26680840,26680893-26681279,26681364-266824...    29   7.2  
12_01_0811 - 7440413-7440712,7441285-7441398,7441448-7441705,744...    28   9.5  

>03_05_0821 - 27960414-27961253
          Length = 279

 Score = 58.0 bits (134), Expect = 1e-08
 Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 11/156 (7%)

Query: 90  YYFSKFTEFMDTLFFVLRKKNEHVSTLHVIHHGIMPMSVWFGLKFAPGGHSTFFALLNTF 149
           +Y SK  E  DTL  +L ++   ++ LHV HH  +    +  L           A  N  
Sbjct: 125 FYLSKVYELGDTLLILLGRRP--LTLLHVYHHAAVIAMCYLWLATRQSLMPIALAT-NAA 181

Query: 150 VHIVMYFYYMVAAMGPKYQKYIWWKKYLTAFQMVQFVLIFSHQLQVLFR----PSCQYPR 205
           VH+ MY YY+  ++G ++     WK+ +T  Q+ QF+  F+    +L+R      C+   
Sbjct: 182 VHVAMYGYYLCCSLGLRWPPR--WKRAVTELQIAQFLFSFAASAVMLWRHFAAGGCEGMA 239

Query: 206 VFVYWIAMHGFLFLFLFSDFYKARYTTAE-RKSKAQ 240
            + +    +  L L LF DF+ A Y  A+ +KS+++
Sbjct: 240 GWAFNAVFNASL-LALFLDFHGAAYAAAKGKKSRSE 274


>06_01_0175 -
           1371089-1371706,1371812-1371994,1372069-1372324,
           1372407-1372976,1373423-1373529,1373664-1374136,
           1374279-1374372
          Length = 766

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 38  LVVYNMAQTIFSAWIFYEYLMSGWWGHYDFRCQLVDYSRSPMAMRMANT 86
           +++ N+  TIF+   + E L   WWG   F C +  +   P+ +  A T
Sbjct: 451 ILIANIGTTIFACEYYNEELQLPWWGVL-FACSIAFFFTLPIGIIKATT 498


>06_01_0173 -
           1364219-1364836,1364941-1365123,1365215-1365470,
           1365551-1366120,1367066-1367178,1367344-1367816,
           1367906-1367984
          Length = 763

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 38  LVVYNMAQTIFSAWIFYEYLMSGWWGHYDFRCQLVDYSRSPMAMRMANT 86
           +++ N+A TIF+   + E L   WWG     C +  +   P+ +  A T
Sbjct: 448 ILIANIAVTIFACEYYIEQLQLPWWGVL-LACAIAFFFTLPIGIITATT 495


>06_03_0992 -
           26680555-26680840,26680893-26681279,26681364-26682441,
           26682537-26683083
          Length = 765

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 9/39 (23%), Positives = 20/39 (51%)

Query: 82  RMANTCWWYYFSKFTEFMDTLFFVLRKKNEHVSTLHVIH 120
           ++ N  WW       +F D ++F++R  +     LH+++
Sbjct: 447 KVLNDVWWDKVQYILDFTDPIYFMIRAADTDKPCLHLVY 485


>12_01_0811 -
           7440413-7440712,7441285-7441398,7441448-7441705,
           7441825-7441998,7442344-7442514,7442607-7442874,
           7443171-7443937,7444437-7445123
          Length = 912

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 50  AWIFYEYLMSGWWGHYDFRCQLVDYSRSPMAMRMANTCW 88
           +WIF   + S WW  +    Q  + S  PM    A  C+
Sbjct: 561 SWIFSRIVESIWWQAFTPHMQSANISSEPMPSSNAKKCY 599


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.328    0.137    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,490,795
Number of Sequences: 37544
Number of extensions: 366678
Number of successful extensions: 956
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 950
Number of HSP's gapped (non-prelim): 7
length of query: 343
length of database: 14,793,348
effective HSP length: 83
effective length of query: 260
effective length of database: 11,677,196
effective search space: 3036070960
effective search space used: 3036070960
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 60 (28.3 bits)