GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000422-TA|BGIBMGA000422-PA|IPR002076|GNS1/SUR4 membrane
protein
         (343 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.72 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.9  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    23   5.1  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    22   6.7  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   8.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   8.9  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.4 bits (53), Expect = 0.72
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 3   SPWPTLAACVCYAYCAKELGPKLMANRK 30
           SP  T+A CVC   C +   P   +N K
Sbjct: 96  SPNSTIAVCVCMRKCPRRHRPVCASNGK 123


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 14/50 (28%), Positives = 23/50 (46%)

Query: 219 LFLFSDFYKARYTTAERKSKAQNGLCMAVMDDSSSSLNGRNGYKQEMGSE 268
           L L  +F+  RY T  R+ +  + LC+          N R  +K+E  S+
Sbjct: 283 LELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSK 332


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 219 LFLFSDFYKARYTTAERKSKAQNGLCMAVMDDSSSSLNGRNGYKQE 264
           L L  +F+  RY T  R+ +  + LC+          N R  +K+E
Sbjct: 21  LELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 66


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 219 LFLFSDFYKARYTTAERKSKAQNGLCMAVMDDSSSSLNGRNGYKQE 264
           L L  +F+  RY T  R+ +  + LC+          N R  +K+E
Sbjct: 21  LELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 66


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 5  WPTLAACVCYAYCA-KELGPKLMANRKPFELRNILVVY 41
          WP      CY YC  ++ G  L+ +++   L  +L  +
Sbjct: 63 WPETRQLKCYMYCLWEQFG--LVDDKRELSLNGMLTFF 98


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 276 SGADALSFDVNKTERDTQIISFTVNKPKRVTQIISFDVNKAKRVPHISFDVNEPK 330
           S  D      NKT    ++IS  V     VT I   ++ +  R+P +SF    P+
Sbjct: 194 SNIDGAEDHCNKTAV-RKVISGVVGAASSVTSIQVANLLRLFRIPLVSFFSTSPE 247


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.137    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,397
Number of Sequences: 429
Number of extensions: 4151
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 6
length of query: 343
length of database: 140,377
effective HSP length: 58
effective length of query: 285
effective length of database: 115,495
effective search space: 32916075
effective search space used: 32916075
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 44 (21.8 bits)