Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000421-TA|BGIBMGA000421-PA|IPR002557|Chitin binding
Peritrophin-A, IPR006162|Phosphopantetheine attachment site
         (702 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    35   0.002
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    34   0.004
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    32   0.015
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    30   0.062
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    28   0.19 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    27   0.58 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    25   2.3  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    24   3.1  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    24   4.1  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    24   4.1  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           24   4.1  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   9.4  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 34.7 bits (76), Expect = 0.002
 Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 5/131 (3%)

Query: 523 NIAASGNRLPEERKKLAKTQSPSKLKSQTSPRPFRPAPTPVS--NPPQTTRAPELPTTTV 580
           N  A   +  ++  +    +  SKLK++++P   + +PTPVS  N   T+ +   P+ T 
Sbjct: 119 NRRAKCRQQQKQHNQQQSVEKSSKLKNKSAPILTKTSPTPVSINNNTSTSSSASSPSVTA 178

Query: 581 VPQTISAQRTFDYYQTYTTTSRPSEAPNFASYNNANAKPTTNLPTKTIESRPTRPHSRGT 640
            P  +     +   Q + +T   S +P  AS    N+  ++     +I+S     H R  
Sbjct: 179 APH-LRDSPNYIKPQLHVSTGSTS-SPTIASATYTNSANSSIWSPASIDSFTLEQH-RSW 235

Query: 641 GAPVAPTISPT 651
            +   P +S T
Sbjct: 236 CSSSQPVLSTT 246


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 33.9 bits (74), Expect = 0.004
 Identities = 31/117 (26%), Positives = 42/117 (35%), Gaps = 4/117 (3%)

Query: 543  SPSKLKSQTSPRPFRPAPTPVSNPPQTTRAPEL---PTTTVVPQTISAQRTFDYYQTYTT 599
            +PS+      P P  PAP  V+    T  +      P  T  P T  +  T   + T TT
Sbjct: 997  NPSREDCTKPPEPVTPAPPQVTTGVDTGASSTEHMHPDWTTKPSTWWSSTTTSPWWT-TT 1055

Query: 600  TSRPSEAPNFASYNNANAKPTTNLPTKTIESRPTRPHSRGTGAPVAPTISPTYVPRP 656
            T+R +      + +      TTN PT+     P          P  P     YVP P
Sbjct: 1056 TTRRTTTTRPTTTSTTTRPTTTNWPTQGTTIPPPAVVMPEVDKPSQPCEPGQYVPDP 1112



 Score = 23.8 bits (49), Expect = 4.1
 Identities = 16/47 (34%), Positives = 18/47 (38%)

Query: 534  ERKKLAKTQSPSKLKSQTSPRPFRPAPTPVSNPPQTTRAPELPTTTV 580
            E KK     S S  +  T P    P+ T       TT     PTTTV
Sbjct: 1153 EEKKPGHKPSTSSWQKPTKPSYRPPSTTNHWQTKTTTSTTTRPTTTV 1199



 Score = 23.0 bits (47), Expect = 7.1
 Identities = 10/18 (55%), Positives = 10/18 (55%)

Query: 618  KPTTNLPTKTIESRPTRP 635
            KPTT  PT TI   P  P
Sbjct: 2211 KPTTMKPTTTIGYEPQEP 2228



 Score = 22.6 bits (46), Expect = 9.4
 Identities = 10/36 (27%), Positives = 14/36 (38%)

Query: 558  PAPTPVSNPPQTTRAPELPTTTVVPQTISAQRTFDY 593
            P  +    P  T   P+ P TT   + I    + DY
Sbjct: 2286 PDASSTMAPSTTPMVPDKPVTTTTSRPIGTDTSDDY 2321


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 31.9 bits (69), Expect = 0.015
 Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 3/75 (4%)

Query: 529 NRLPEERKKLAKTQSPSKLKSQTSPRPFRPAPTPVSNPPQTTRAPE---LPTTTVVPQTI 585
           NR  + R++L + Q+ S  ++ TSP   + +    +  P++   P     P+T+  P T+
Sbjct: 177 NRRAKCRQQLQQQQNKSASRTTTSPTKVKASKASPAAAPRSVATPTGIPTPSTSASPPTV 236

Query: 586 SAQRTFDYYQTYTTT 600
           + ++     Q+Y  T
Sbjct: 237 NIKKESPQMQSYRPT 251


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 29.9 bits (64), Expect = 0.062
 Identities = 13/55 (23%), Positives = 26/55 (47%)

Query: 520 HSLNIAASGNRLPEERKKLAKTQSPSKLKSQTSPRPFRPAPTPVSNPPQTTRAPE 574
           +++N A   + +P E     + Q     +S+ +    +P  +  +  PQTT+ PE
Sbjct: 380 NAINAALKSDEIPPEPVPTPEPQPTQTTESEPTQASEQPTESSTTQKPQTTKTPE 434



 Score = 25.8 bits (54), Expect = 1.0
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 552 SPRPFRPAPTPVSNPPQTTRAPELPTTTVVPQT 584
           +P P +P  T  S P Q +  P   +TT  PQT
Sbjct: 398 TPEP-QPTQTTESEPTQASEQPTESSTTQKPQT 429



 Score = 23.4 bits (48), Expect = 5.4
 Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 7/44 (15%)

Query: 624 PTKTIESRPTRPHSRGTGAPVAPTISPTYVPRPTTKAPHFAKPS 667
           PT+T ES PT+       A   PT S T     TTK P     S
Sbjct: 403 PTQTTESEPTQ-------ASEQPTESSTTQKPQTTKTPESGNES 439



 Score = 23.4 bits (48), Expect = 5.4
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)

Query: 596 TYTTTSRPSEAPNFASYNNANAKPTTNLPTKTIES 630
           T TT S P++A    + ++   KP T   TKT ES
Sbjct: 404 TQTTESEPTQASEQPTESSTTQKPQT---TKTPES 435


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 0.19
 Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)

Query: 47  FFCPPGTLFHQEAQTCTDW 65
           F C PGT+FH ++  C DW
Sbjct: 502 FACRPGTVFHTQSNIC-DW 519


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 26.6 bits (56), Expect = 0.58
 Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 6/100 (6%)

Query: 519 AHSLNIAASGNRLPEER-KKLAKTQSPSKLKSQTSPRPFRPAPTPVSNPPQTTRAPELPT 577
           A S+N+ A+ +  P  R   LA   +     S  SP P   A       P        P+
Sbjct: 19  AMSMNVKAAEH--PSLRGTPLAMLAAQCNKLSNKSPPPLADAAVGKGFHPWKKSPQGAPS 76

Query: 578 TTVVPQTISAQRTFDYYQTYTTTS---RPSEAPNFASYNN 614
            +  P ++  QRT     TY++ S     S  P  ASY +
Sbjct: 77  PSSTPSSLPTQRTSTSNPTYSSRSVMTSCSSVPTTASYGS 116


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 6/78 (7%)

Query: 255 NPQNKQSNTTP-STPYQNQQTFTTINVPTQRQSETTPNLPPQFREYKDEYVEVSRVTPKQ 313
           NP +     TP S P     T++T+  PT   S T  N           Y   ++ TP Q
Sbjct: 286 NPPDHIQQATPYSAPGPTYSTWSTVQTPTTVMSPTI-NCWSLTSSPPPPYQISAQPTPSQ 344

Query: 314 --NRFYN--SKATQITFP 327
             N+ Y   +  T +T+P
Sbjct: 345 SPNQIYQPVTNLTNLTYP 362


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 628 IESRPTRPHSRGTGAPVAPTISPTYVPRPTTKAPHFAKP 666
           + +RP  P S G     AP +   ++     + PHFA P
Sbjct: 183 LSARPLLPPSFGIFPGGAPPLVSPFLAAMAHRPPHFAFP 221


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 260 QSNTTPSTPYQNQQTFTTINVPTQRQSETTPNLPPQFREYKDEYVEVSRVTPKQNR 315
           Q+  TP   Y+N Q +   N   +  S + P  P  F  +   + + S    K+ R
Sbjct: 134 QAKKTPPNQYENFQQYDNNNFSAEENSVSEP--PANFYPWMKAHGDSSATGNKRTR 187


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 260 QSNTTPSTPYQNQQTFTTINVPTQRQSETTPNLPPQFREYKDEYVEVSRVTPKQNR 315
           Q+  TP   Y+N Q +   N   +  S + P  P  F  +   + + S    K+ R
Sbjct: 134 QAKKTPPNQYENFQQYDNNNFSAEENSVSEP--PANFYPWMKAHGDSSATGNKRTR 187


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 260 QSNTTPSTPYQNQQTFTTINVPTQRQSETTPNLPPQFREYKDEYVEVSRVTPKQNR 315
           Q+  TP   Y+N Q +   N   +  S + P  P  F  +   + + S    K+ R
Sbjct: 134 QAKKTPPNQYENFQQYDNNNFSAEENSVSEP--PANFYPWMKAHGDSSATGNKRTR 187


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 236 NLPSQQPYFELTQQNFNRRNPQNKQSNTTPS 266
           N PS +P ++ +++   + NP NK +    S
Sbjct: 373 NYPSYEPTYDNSRREGKQLNPLNKGTEADSS 403


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.129    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,211
Number of Sequences: 317
Number of extensions: 7837
Number of successful extensions: 27
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 19
length of query: 702
length of database: 114,650
effective HSP length: 62
effective length of query: 640
effective length of database: 94,996
effective search space: 60797440
effective search space used: 60797440
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 46 (22.6 bits)