Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000419-TA|BGIBMGA000419-PA|IPR008927|6-phosphogluconate
dehydrogenase, C-terminal-like, IPR006176|3-hydroxyacyl-CoA
dehydrogenase, NAD-binding, IPR006108|3-hydroxyacyl-CoA dehydrogenase,
C-terminal
         (323 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12)              135   4e-32
SB_14586| Best HMM Match : 3HCDH (HMM E-Value=0.0029)                  75   6e-14
SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   2e-09
SB_8863| Best HMM Match : DAO (HMM E-Value=0.04)                       32   0.55 
SB_22397| Best HMM Match : DAO (HMM E-Value=7.6e-06)                   31   0.96 
SB_57609| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_16736| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17)                 29   5.1  
SB_6983| Best HMM Match : rve (HMM E-Value=0.011)                      29   5.1  
SB_2419| Best HMM Match : RPEL (HMM E-Value=5.8)                       29   5.1  
SB_51553| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_54640| Best HMM Match : TolA (HMM E-Value=1.7)                      28   8.9  

>SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12)
          Length = 120

 Score =  135 bits (327), Expect = 4e-32
 Identities = 58/118 (49%), Positives = 83/118 (70%), Gaps = 1/118 (0%)

Query: 94  ECVPENLDLKKKVFQNLDSVVDDN-TIXXXXXXXXXXXXXXEGLKHKSQVIVSHPVNPPY 152
           EC PENL+LKKKVFQNL++ +  +  I              E L+ + + IV+HP+NPPY
Sbjct: 1   ECTPENLELKKKVFQNLEATLSSSEVILASSTSCIMPSKFTESLQLRQRCIVAHPINPPY 60

Query: 153 YVPLVEIVPAPWTKPEVAKKTREIMEEIGQQPVSLTREIDGFVLNRIQYAILDEVWRL 210
           YVPLVE++PAPWT   V ++T ++M++IGQ PV L +E +GF++NR+QYA++ E WRL
Sbjct: 61  YVPLVEVIPAPWTDASVIEQTIKLMKDIGQSPVLLKKETNGFIVNRLQYALIAEAWRL 118


>SB_14586| Best HMM Match : 3HCDH (HMM E-Value=0.0029)
          Length = 107

 Score = 75.4 bits (177), Expect = 6e-14
 Identities = 38/92 (41%), Positives = 59/92 (64%), Gaps = 3/92 (3%)

Query: 225 MSEGLGMRYAFLGALETAHLNAEGMQSYIDRYGETIYR-VSNEMGPAPRMTTNKSRNSVC 283
           M+EGLG+RY+ +G  ET HLNA+G++ Y  RYG+ I+  V N   P+P   T  + ++V 
Sbjct: 13  MTEGLGLRYSLIGPFETMHLNADGIRDYCQRYGDNIHHIVKNSTIPSP--LTGATLDTVE 70

Query: 284 EQLEKLVPIEKLQDRRNWRDLCLMRLSLLKKE 315
           E L + +P++KL DRR  RD  L  L++ + +
Sbjct: 71  EDLCQTMPLDKLSDRRALRDRRLAALAVFRAQ 102


>SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 812

 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 6/170 (3%)

Query: 10  IGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLENDGLLRGELKA 69
           + ++G+GL+G   A   A  G +V +YD  A+    A+E  K  L   + + L R E+ A
Sbjct: 8   VAVIGAGLMGTCIAGELAYHGARVNLYDRSAQ----AMEKSKEML-IQQKEQLKREEVMA 62

Query: 70  SEQF-QCIKGSTDLETAVKGAIFVQECVPENLDLKKKVFQNLDSVVDDNTIXXXXXXXXX 128
           +  F   +     LE AV  +  + E   ENL++KK VF+++      N +         
Sbjct: 63  TSDFIGTVAFCESLEEAVVNSGLIFEATIENLEVKKSVFKSISQFCRTNAVIATNTLALD 122

Query: 129 XXXXXEGLKHKSQVIVSHPVNPPYYVPLVEIVPAPWTKPEVAKKTREIME 178
                E + +  + +    + P Y +P VEI     T PE  +K ++ +E
Sbjct: 123 TSVVAEHVTNPERCLGIRFLYPVYSIPEVEITLGSQTSPETIQKVQQFLE 172


>SB_8863| Best HMM Match : DAO (HMM E-Value=0.04)
          Length = 485

 Score = 32.3 bits (70), Expect = 0.55
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 9   KIGIVGSGLIGRSWAMLFASVGYQVTVYD 37
           ++ IVG GL+G   A+ FA  GY+V +Y+
Sbjct: 165 EVAIVGGGLVGALSAVFFAKRGYKVDLYE 193


>SB_22397| Best HMM Match : DAO (HMM E-Value=7.6e-06)
          Length = 456

 Score = 31.5 bits (68), Expect = 0.96
 Identities = 12/35 (34%), Positives = 24/35 (68%)

Query: 1  MASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTV 35
          ++S F  +++ ++G+G+IG + A    + GY+VTV
Sbjct: 13 LSSPFGGQRVLVIGAGVIGLTTAYELLTAGYEVTV 47


>SB_57609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 9  KIGIVGSGLIGRSWAMLFASVGYQVTVYD 37
          K+GIVGSG+ G S A L    G +V +Y+
Sbjct: 2  KVGIVGSGIAGLSAAWLLTLRGNEVHLYE 30


>SB_16736| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17)
          Length = 765

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 43  ITDAIEDIKYQLHTLENDGLLRGELKASEQFQCIKGSTDLETAVKGAIFVQECVPENLD- 101
           +  AIE  +      EN  L+ GE+  S+  +     T L   VK  I     V E+L  
Sbjct: 105 LAQAIERCRMNEMRKENRDLVLGEINKSDSMRICVDLTQLNEGVKWEIQPMPSVDESLSK 164

Query: 102 -LKKKVFQNLDS 112
             + KVF  LD+
Sbjct: 165 LSQGKVFSKLDA 176


>SB_6983| Best HMM Match : rve (HMM E-Value=0.011)
          Length = 251

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 135 GLKHKSQVIVSHPVNPPYYVPLVE-IVPAPWTKPEVAKKTREIMEEIGQQPVS 186
           G+ +    +V  P  P    P+   +VP+P T+PEV   T   +E+   Q  S
Sbjct: 193 GMPNSPPQVVDIPETPAVVPPIPTLVVPSPLTQPEVESPTPSCIEQQPSQQYS 245


>SB_2419| Best HMM Match : RPEL (HMM E-Value=5.8)
          Length = 116

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 271 PRMTTNKSRNSVCEQLEKLVPIEKLQDRRNWRDLCLMRLSLLKK 314
           P   + + R+++C++LEK +  E+  + R +R+L L+   LLK+
Sbjct: 70  PTSASQRRRSAICDELEKRIYCEQGANLRKFREL-LVTQRLLKE 112


>SB_51553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1036

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 276 NKSRNSVCEQLEKLVPIEKLQDRRNWRDLCLMRLSLLKKEMNKKYQS 322
           NK +N V   L K V  EKLQ   N   L L RLS  ++E    Y S
Sbjct: 947 NKEKNDVRAALSKGVKDEKLQQTMN---LTLKRLSTYQREFELVYFS 990


>SB_54640| Best HMM Match : TolA (HMM E-Value=1.7)
          Length = 589

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 18 IGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQ 53
          +GR W +   ++ +QV   D V KQ   A++D  Y+
Sbjct: 1  MGRLWILAIPAIIWQVCTTDAVRKQQLRAVDDETYK 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.134    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,399,718
Number of Sequences: 59808
Number of extensions: 343083
Number of successful extensions: 821
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 811
Number of HSP's gapped (non-prelim): 11
length of query: 323
length of database: 16,821,457
effective HSP length: 82
effective length of query: 241
effective length of database: 11,917,201
effective search space: 2872045441
effective search space used: 2872045441
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)