GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000419-TA|BGIBMGA000419-PA|IPR008927|6-phosphogluconate
dehydrogenase, C-terminal-like, IPR006176|3-hydroxyacyl-CoA
dehydrogenase, NAD-binding, IPR006108|3-hydroxyacyl-CoA dehydrogenase,
C-terminal
         (323 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    30   0.51 
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    29   0.67 
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    29   0.89 
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc...    27   2.7  
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac...    27   2.7  
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    27   3.6  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   3.6  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    27   4.7  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   8.3  
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    26   8.3  
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi...    26   8.3  

>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 330

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 2  ASKFKSEKIGIVGSGLIGRSWA--MLFASVGYQVTVYDVVAKQITDAIEDIKY 52
          +S FKS KI IVG+G +G + A  +L + +  ++ + D+  K+      D+ +
Sbjct: 15 SSSFKSIKIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLNKKKAEGEAMDLNH 67


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 152  YYVPLVEIVPAPWTKPEVAKKTREIMEEIGQQPVSLTREIDGFVLN 197
            Y   ++++VP P  +PE   K + +  E  +  V++  E+DG++L+
Sbjct: 1139 YLFEIIDVVPQPG-RPETRHKLKLVTREEIKGTVAVVCEVDGYLLS 1183


>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 11/36 (30%), Positives = 22/36 (61%)

Query: 4   KFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVV 39
           + + + +GI+G G IG   ++L  ++G  V  YD++
Sbjct: 192 EIRGKTLGIIGYGHIGSQLSVLAEAMGLHVVYYDIL 227


>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
          |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 9  KIGIVGSGLIGRSWAMLFASVGYQVTVYD 37
          ++GI+G G +GR +A   +  G++V V D
Sbjct: 6  QVGIIGFGDMGRLYAEYISKAGWRVNVCD 34


>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 340

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 9/30 (30%), Positives = 20/30 (66%)

Query: 8   EKIGIVGSGLIGRSWAMLFASVGYQVTVYD 37
           +++GI+G G IG+S+A     +G ++  ++
Sbjct: 160 KRVGIIGMGAIGKSFAQKILPLGCEIVYHN 189


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 29  VGYQVTVYDVVAKQITDAIEDIKYQLHTLENDGLLRGELKASEQFQCIKGSTDLETAVKG 88
           +G   T++    K +   +++I Y  H ++   +++       +   IK STDL  A   
Sbjct: 177 IGLTATLFRADGKGLACGLDEIVYHRHFVD---MIKDNWLVEPKVINIKWSTDLVLADSS 233

Query: 89  AIFVQECVPENLDLKKKVFQ 108
           +   QE + +    +K +F+
Sbjct: 234 SFLDQEKLKKEAQSEKAIFE 253


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 41  KQITDAIEDIKYQLHTLENDGLLRGELKASEQ 72
           K +T  IEDI   +H    + L R EL+ S+Q
Sbjct: 76  KSLTINIEDIYLSIHPQAKNSLTRDELEQSQQ 107


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 245 NAEGMQSYIDRYGETIYRVSNEMGPAPR--MTTNKSRNSVCEQLEKLVPIEKLQDRRNWR 302
           N+E ++S +D   + I ++ NE+    R  +    S  ++ E+ +K   I+KL D  + +
Sbjct: 370 NSESLKSRVDNLNDYITKLQNEIDECRRNLLWAESSCETIREENQK--NIKKLNDAESLK 427

Query: 303 DLCLMRLSLLKKEMNKKYQSS 323
              L   + ++ E++    S+
Sbjct: 428 SRLLQSRTQMQTELDSYITSN 448


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 235 FLGALETAHLNAEGMQSYIDRYGETIYRV--SNEMGPAPRMTTNKSRNSVCEQ 285
           +L  +  A L+      +  RY   I RV  SN   PAPR  TN S N+   Q
Sbjct: 365 YLPFVSVAFLSLVPSVMFTMRYLALILRVQNSNMPPPAPRPVTNNSSNNNTNQ 417


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/50 (26%), Positives = 23/50 (46%)

Query: 243 HLNAEGMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNSVCEQLEKLVPI 292
           H   +  Q+Y+    E + R+ NE+    R+ T+     V ++ E  V I
Sbjct: 123 HRQLQTAQNYLTEMKEALGRIKNELSTNERLDTSAREALVKQESELTVKI 172


>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 615

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 9/86 (10%)

Query: 39  VAKQITDA---IEDIKYQLHTLE-NDGLLRGELK-----ASEQFQCIKGSTDLETAVKGA 89
           VAK ++DA   +  +  +L  LE + G+LR ++      +S  +  +K    L+      
Sbjct: 23  VAKNVSDASNILLSMDKRLSGLEASAGILRDDVTNYNRVSSNIYDTLKEMESLQVIHSHL 82

Query: 90  IFVQECVPENLDLKKKVFQNLDSVVD 115
             +Q+ + E  +L K V QNL SV+D
Sbjct: 83  PVLQKGLQECQNLNKSVSQNLKSVMD 108


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.134    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,317,272
Number of Sequences: 5004
Number of extensions: 49220
Number of successful extensions: 145
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 140
Number of HSP's gapped (non-prelim): 11
length of query: 323
length of database: 2,362,478
effective HSP length: 73
effective length of query: 250
effective length of database: 1,997,186
effective search space: 499296500
effective search space used: 499296500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)