Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000419-TA|BGIBMGA000419-PA|IPR008927|6-phosphogluconate
dehydrogenase, C-terminal-like, IPR006176|3-hydroxyacyl-CoA
dehydrogenase, NAD-binding, IPR006108|3-hydroxyacyl-CoA dehydrogenase,
C-terminal
(323 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1005 + 33723743-33723946,33724035-33724256,33724789-337249... 86 4e-17
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716... 74 2e-13
05_04_0012 + 17145112-17145205,17145681-17145752,17145832-171459... 63 3e-10
02_02_0418 + 10000744-10000840,10000952-10001023,10001786-100018... 59 4e-09
05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006,316... 55 7e-08
06_01_0080 + 644021-645463 30 2.2
02_01_0656 - 4870315-4870975,4872018-4872245,4872874-4872987,487... 29 3.8
06_03_0650 + 23157130-23157582,23157687-23157898,23157982-231581... 29 6.7
05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468 29 6.7
05_05_0252 - 23621592-23621912,23621958-23622317,23622979-236230... 29 6.7
03_01_0110 - 865605-866004,866094-866712,867659-867863 29 6.7
01_06_1543 - 38138253-38138855,38139000-38139239 29 6.7
01_06_0663 - 30991390-30992340 29 6.7
01_01_0955 - 7494486-7496327 29 6.7
07_01_0743 + 5678086-5678098,5678436-5678560,5678666-5678800,567... 28 8.8
>01_06_1005 +
33723743-33723946,33724035-33724256,33724789-33724901,
33725581-33725950
Length = 302
Score = 85.8 bits (203), Expect = 4e-17
Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 8/204 (3%)
Query: 10 IGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLENDGLL-RGELK 68
+G++G+G +G A L A+ G V + D ++ A++ I L L G L + +
Sbjct: 13 VGVIGAGQMGSGIAQLAAAAGCGVLLLDSDTAALSRAVDSISSSLRRLVAKGQLSQASCE 72
Query: 69 AS-EQFQCIKGSTDLETAVKGAIFVQECVPENLDLKKKVFQNLDSVVDDNTIXXXXXXXX 127
S EQ +C+ +L + A V E + E+ D+KKK+F LD + + I
Sbjct: 73 HSIEQIKCVSSVQEL----RDADLVIEAIVESEDIKKKLFVELDKITKPSAILASNTSSI 128
Query: 128 XXXXXXEGLKHKSQVIVSHPVNPPYYVPLVEIVPAPWTKPEVAKKTREIMEEIGQQPVSL 187
QVI H NPP + L+EI+ T EV K + E +G + V
Sbjct: 129 SITRLASATNRPCQVIGMHFFNPPPIMKLIEIIRGADTSEEVFTKVKSFSERLG-KTVIC 187
Query: 188 TREIDGFVLNRIQYAILDEV-WRL 210
+++ GF++NRI +++E W L
Sbjct: 188 SQDYPGFIVNRILMPMINEAFWAL 211
>01_03_0216 +
13870364-13870472,13871406-13871477,13871603-13871668,
13871767-13871823,13871917-13871984,13872068-13872149,
13872445-13872500,13872645-13872947,13873042-13873128,
13873199-13873373,13873481-13873602,13873689-13873852,
13873925-13874179,13874312-13874433,13874542-13874663,
13875111-13875259,13875346-13875484,13875715-13875750
Length = 727
Score = 73.7 bits (173), Expect = 2e-13
Identities = 49/194 (25%), Positives = 88/194 (45%), Gaps = 3/194 (1%)
Query: 6 KSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLENDGLLRG 65
K K+ I+G GL+G A Y V + +V K + I+ IK L + G +
Sbjct: 313 KVTKVAILGGGLMGSGIATAMILSNYPVILKEVNEKFLNAGIDRIKANLQSRVRKGKMTE 372
Query: 66 ELKASEQFQCIKGSTDLETAVKGAIFVQECVPENLDLKKKVFQNLDSVVDDNTIXXXXXX 125
E + + + G D E K V E V EN+ LK+++F +L+ + +
Sbjct: 373 E-RYEKAMSLVTGVLDYER-FKDVDLVIEAVIENVKLKQQIFSDLEKYCPSHCVLATNTS 430
Query: 126 XXXXXXXXEGLKHKSQVIVSHPVNPPYYVPLVEIVPAPWTKPEVAKKTREIMEEIGQQPV 185
E + K +++ +H +P + +PL+EIV T P+V ++ ++I + P+
Sbjct: 431 TIDLNLIGEKTRSKDRIVGAHFFSPAHVMPLLEIVRTQHTSPQVVVDLLDVGKKIKKTPI 490
Query: 186 SLTREIDGFVLNRI 199
+ GF +NR+
Sbjct: 491 -VVGNCTGFAVNRM 503
>05_04_0012 +
17145112-17145205,17145681-17145752,17145832-17145911,
17146059-17146175,17146282-17146363,17147086-17147141,
17147258-17147560,17147658-17147744,17148118-17148292,
17148370-17148491,17149028-17149191,17149277-17149531,
17150419-17150540,17150656-17150777,17151302-17151450,
17151565-17151703,17151831-17151866
Length = 724
Score = 63.3 bits (147), Expect = 3e-10
Identities = 56/254 (22%), Positives = 99/254 (38%), Gaps = 3/254 (1%)
Query: 9 KIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLENDGLLRGELK 68
K+ IVG GL+G A S V + +V + + I +K L +L G + E
Sbjct: 313 KVAIVGGGLMGSGIATALISNNLLVILKEVNEQFLDAGISRVKANLQSLVKRGQMTKE-D 371
Query: 69 ASEQFQCIKGSTDLETAVKGAIFVQECVPENLDLKKKVFQNLDSVVDDNTIXXXXXXXXX 128
+ + G D E + A V E V E+L LK+K+F +L+ N I
Sbjct: 372 YENKLSLLSGVLDYEQ-FREADVVIEAVIEDLSLKQKIFADLEKYCHSNCILATNTSTID 430
Query: 129 XXXXXEGLKHKSQVIVSHPVNPPYYVPLVEIVPAPWTKPEVAKKTREIMEEIGQQPVSLT 188
+ + ++ +H +P + +PL+EI+ T +V + ++I + P+ +
Sbjct: 431 LHLIGQKTSCQDRIAGAHFFSPAHAMPLLEIIRTHRTSSQVVIDLLNVAKQIRKTPI-VV 489
Query: 189 REIDGFVLNRIQYAILDEVWRLXXXXXXXXXXXXXXMSEGLGMRYAFLGALETAHLNAEG 248
GF +NR+ + + L G+ M L L +
Sbjct: 490 GNCTGFAVNRMFFPFTQVAYFLVDYGLDVYHIDHVITKFGMPMGPFRLADLVGFGVAIAS 549
Query: 249 MQSYIDRYGETIYR 262
+ Y+ Y E Y+
Sbjct: 550 RKQYLQSYPERCYK 563
>02_02_0418 +
10000744-10000840,10000952-10001023,10001786-10001848,
10001952-10002008,10002159-10002226,10002327-10002408,
10002517-10002572,10002934-10003236,10003638-10003724,
10004454-10004628,10004813-10004934,10005171-10005334,
10006201-10006455,10006979-10007100,10007220-10007341,
10007452-10007600,10007649-10007652
Length = 665
Score = 59.3 bits (137), Expect = 4e-09
Identities = 47/193 (24%), Positives = 81/193 (41%), Gaps = 3/193 (1%)
Query: 6 KSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLENDGLLRG 65
K K+ ++G GL+G A V + +V + + + I L L G L
Sbjct: 308 KIRKVAVIGGGLMGSGIATALLVSNTSVVLKEVNPQFLQRGQKMIAANLEGLVKRGSLTK 367
Query: 66 ELKASEQFQCIKGSTDLETAVKGAIFVQECVPENLDLKKKVFQNLDSVVDDNTIXXXXXX 125
+ K ++ +KG+ D K V E V E + LK+ +F +L+ V + I
Sbjct: 368 D-KMNKAMSLLKGALDYSD-FKDVDMVIEAVIEKIPLKQSIFSDLEKVCPPHCILATNTS 425
Query: 126 XXXXXXXXEGLKHKSQVIVSHPVNPPYYVPLVEIVPAPWTKPEVAKKTREIMEEIGQQPV 185
E + ++I +H +P + +PL+EIV T P+ + + I + PV
Sbjct: 426 TIDLNVVGEKTNSQDRIIGAHFFSPAHIMPLLEIVRTEKTSPQAILDLITVGKMIKKVPV 485
Query: 186 SLTREIDGFVLNR 198
+ GF +NR
Sbjct: 486 -VVGNCTGFAVNR 497
>05_01_0400 -
3159370-3159385,3159599-3159703,3159972-3160006,
3160134-3160272,3160457-3160605,3161052-3161173,
3161296-3161417,3161779-3162033,3162108-3162271,
3162311-3162489,3162593-3162767,3162916-3163002,
3163144-3163446,3163539-3163594,3163813-3163894,
3163972-3164039,3164779-3164835,3164926-3164991,
3165121-3165192,3167363-3167459
Length = 782
Score = 55.2 bits (127), Expect = 7e-08
Identities = 48/212 (22%), Positives = 89/212 (41%), Gaps = 20/212 (9%)
Query: 6 KSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLENDGLLRG 65
K K+ IVG GL+G A Y V + +V K + I+ IK L + +G +
Sbjct: 309 KVSKVAIVGGGLMGSGIATALMLSNYPVVLKEVNDKFLDAGIDRIKANLQSRVRNGKMTK 368
Query: 66 ELKASEQFQCIKGSTDLETAVKGAIFVQE------------------CVPENLDLKKKVF 107
E+ + + G D E + ++E V EN+ +K++VF
Sbjct: 369 EIY-EKTLSLLTGVVDYERFKDVDLVIEESNTSNCYLAIYFIEQYWMAVVENVKVKQQVF 427
Query: 108 QNLDSVVDDNTIXXXXXXXXXXXXXXEGLKHKSQVIVSHPVNPPYYVPLVEIVPAPWTKP 167
+L+ + + E + ++ +H +P + +PL+EIV + T P
Sbjct: 428 ADLERYCPSHCVLATNTSTIDLDLIGEKTNSQDRIAGAHFFSPAHVMPLLEIVRSNHTSP 487
Query: 168 EVAKKTREIMEEIGQQPVSLTREIDGFVLNRI 199
+V ++ ++I + PV + GF +NR+
Sbjct: 488 QVVVDLLDVGKKIKKTPV-VVGNCTGFAVNRM 518
>06_01_0080 + 644021-645463
Length = 480
Score = 30.3 bits (65), Expect = 2.2
Identities = 10/45 (22%), Positives = 27/45 (60%)
Query: 9 KIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQ 53
+IG+ G ++G++ A+ A G+ ++VY+ ++ + ++ K +
Sbjct: 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVQRAKVE 49
>02_01_0656 -
4870315-4870975,4872018-4872245,4872874-4872987,
4873813-4873901
Length = 363
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 11 GIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLEND 60
G++G G +G + S+G+ VTV A++ +A++D+ + + +D
Sbjct: 185 GVLGLGGVGHMGVKVAKSMGHHVTVISSSARKRGEAMDDLGADAYLVSSD 234
>06_03_0650 +
23157130-23157582,23157687-23157898,23157982-23158128,
23158214-23158347,23158442-23158551,23158711-23158817,
23159045-23159183,23159286-23159402,23159737-23159844,
23159927-23159998,23160108-23160230,23160336-23160495,
23160585-23160706,23160825-23160962,23161042-23161184,
23161305-23161367,23161567-23161630,23161709-23161844,
23162123-23162196,23162764-23162858,23162951-23162982,
23163104-23163276
Length = 973
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 159 IVPAPWTKPEVAKKTREIMEEIGQQPVSLTREIDGFVLN 197
++PAPW K K +E + ++GQ + + I+G +N
Sbjct: 504 VLPAPWLKYHDTGKEKECLPQVGQWNMVNKKVINGCKVN 542
>05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468
Length = 898
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 134 EGLKHKSQVIVSHPVNPPYYVPLVEIVPAPWTKPEVAKKTREIMEEIGQ 182
E L H V+ + PV+ +VE+ P TK +A+K M+E GQ
Sbjct: 745 EMLDHLESVLANEPVSVKSGQFIVEVKPQGVTKGLIAEKVLTSMKEKGQ 793
>05_05_0252 -
23621592-23621912,23621958-23622317,23622979-23623059,
23623262-23623633
Length = 377
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 159 IVPAPWTKPEVAKKTREIMEEIGQQPVSLT 188
IVPAPW++P K + I+++ G+ + T
Sbjct: 282 IVPAPWSRPLSEKVIKAILKDNGETKTTTT 311
>03_01_0110 - 865605-866004,866094-866712,867659-867863
Length = 407
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 147 PVNPPYYVPL---VEIVPAPWTKPE 168
PV PP Y+ L ++VP PW +PE
Sbjct: 317 PVKPPTYLRLNSKAQLVPNPWRQPE 341
>01_06_1543 - 38138253-38138855,38139000-38139239
Length = 280
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 161 PAPWTKPEVAKKTREIMEEIGQQPV 185
PAP P+VAKK +E++E+ G PV
Sbjct: 84 PAPGA-PDVAKKAKELLEQAGFGPV 107
>01_06_0663 - 30991390-30992340
Length = 316
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 9 KIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQ 42
++ VG+G++G+S A + GY +TVY+ A +
Sbjct: 21 RVAWVGTGVMGQSMAGHLLAAGYALTVYNRTASK 54
>01_01_0955 - 7494486-7496327
Length = 613
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 246 AEGMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNSVCEQLEKLVPIEKL 295
A G+ S+ ++G I VSNE P + S + QL+K P++KL
Sbjct: 321 ARGLNSHQQKFGNGILIVSNEATPRNNGGVDSS-TATQFQLQKAPPLQKL 369
>07_01_0743 +
5678086-5678098,5678436-5678560,5678666-5678800,
5679128-5679200,5679581-5679654,5680292-5680396,
5680637-5680881,5680965-5681052,5681202-5681244,
5681319-5681475,5681648-5681776,5682012-5682084,
5682281-5682445,5682530-5682544,5682651-5682780,
5684517-5684651,5684880-5684945,5685088-5685170,
5685503-5685549,5685736-5685814,5685914-5686006
Length = 690
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 9 KIGIVGSGLIGRSWAMLFASVGYQVTVYD 37
K+ I+G+GL G S A+ G++V +Y+
Sbjct: 23 KVAIIGAGLAGMSTAVELLDQGHEVDLYE 51
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.134 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,102,649
Number of Sequences: 37544
Number of extensions: 293510
Number of successful extensions: 787
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 771
Number of HSP's gapped (non-prelim): 16
length of query: 323
length of database: 14,793,348
effective HSP length: 82
effective length of query: 241
effective length of database: 11,714,740
effective search space: 2823252340
effective search space used: 2823252340
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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