Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000419-TA|BGIBMGA000419-PA|IPR008927|6-phosphogluconate
dehydrogenase, C-terminal-like, IPR006176|3-hydroxyacyl-CoA
dehydrogenase, NAD-binding, IPR006108|3-hydroxyacyl-CoA dehydrogenase,
C-terminal
(323 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g15290.1 68416.m01931 3-hydroxybutyryl-CoA dehydrogenase, put... 87 2e-17
At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP... 75 6e-14
At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fat... 69 3e-12
At4g13610.1 68417.m02118 DNA (cytosine-5-)-methyltransferase, pu... 31 1.0
At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family... 31 1.0
At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family... 31 1.0
At4g39952.1 68417.m05658 pentatricopeptide (PPR) repeat-containi... 31 1.4
At4g29120.1 68417.m04168 6-phosphogluconate dehydrogenase NAD-bi... 31 1.4
At3g04870.2 68416.m00529 zeta-carotene desaturase (ZDS1) / carot... 31 1.4
At3g04870.1 68416.m00528 zeta-carotene desaturase (ZDS1) / carot... 31 1.4
At1g22310.1 68414.m02791 DNA-binding protein-related contains Pf... 30 2.4
At5g43810.1 68418.m05357 pinhead protein (PINHEAD) / zwille prot... 29 3.2
At5g40610.1 68418.m04930 glycerol-3-phosphate dehydrogenase [NAD... 29 4.2
At4g34230.1 68417.m04864 cinnamyl-alcohol dehydrogenase, putativ... 29 4.2
At2g01760.1 68415.m00106 two-component responsive regulator fami... 29 4.2
At1g56000.1 68414.m06425 amine oxidase-related contains Pfam pro... 29 4.2
At1g55980.1 68414.m06421 expressed protein 29 4.2
At5g41670.2 68418.m05063 6-phosphogluconate dehydrogenase family... 29 5.5
At5g41670.1 68418.m05062 6-phosphogluconate dehydrogenase family... 29 5.5
At3g51620.1 68416.m05658 expressed protein 29 5.5
At1g64190.1 68414.m07272 6-phosphogluconate dehydrogenase family... 29 5.5
At5g52850.1 68418.m06560 pentatricopeptide (PPR) repeat-containi... 28 7.3
At5g45150.1 68418.m05543 ribonuclease III family protein similar... 28 9.7
At5g41430.1 68418.m05032 zinc finger (C3HC4-type RING finger) fa... 28 9.7
At1g71180.1 68414.m08213 6-phosphogluconate dehydrogenase NAD-bi... 28 9.7
At1g71170.1 68414.m08212 6-phosphogluconate dehydrogenase NAD-bi... 28 9.7
>At3g15290.1 68416.m01931 3-hydroxybutyryl-CoA dehydrogenase,
putative similar to S(+)-beta-hydroxybutyryl CoA
dehydrogenase (3-hydroxybutyryl-CoA dehydrogenase)
[Paracoccus denitrificans] GI:12003356; contains Pfam
profiles PF02737: 3-hydroxyacyl-CoA dehydrogenase NAD
binding, PF00725: 3-hydroxyacyl-CoA dehydrogenase
C-terminal
Length = 294
Score = 86.6 bits (205), Expect = 2e-17
Identities = 62/237 (26%), Positives = 105/237 (44%), Gaps = 6/237 (2%)
Query: 8 EKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLENDGLLRGEL 67
+ +G+VG+G +G A L A+ G V + D ++ A I + + GL+ E+
Sbjct: 5 KSVGVVGAGQMGSGIAQLAATSGLDVWLMDADRDALSRATAAISSSVKRFVSKGLISKEV 64
Query: 68 KASEQFQCIKGSTDLETAVKGAIFVQECVPENLDLKKKVFQNLDSVVDDNTIXXXXXXXX 127
+ ++ +++LE I V E + E+ D+KKK+F++LD + + I
Sbjct: 65 -GDDAMHRLRLTSNLEDLCSADIIV-EAIVESEDIKKKLFKDLDGIAKSSAILASNTSSI 122
Query: 128 XXXXXXEGLKHKSQVIVSHPVNPPYYVPLVEIVPAPWTKPEVAKKTREIMEEIGQQPVSL 187
+ SQVI H +NPP + LVEI+ T E T+ + E G+ V
Sbjct: 123 SITRLASATRRPSQVIGMHFMNPPPIMKLVEIIRGADTSEETFLATKVLAERFGKTTV-C 181
Query: 188 TREIDGFVLNRIQYAILDEVWRLXXXXXXXXXXXXXXMSEGLGMRYAFLGALETAHL 244
+++ GFV+NRI +++E + M G +G LE A L
Sbjct: 182 SQDYAGFVVNRILMPMINEAFHTLYTGVATKEDIDSGMKHGTNHP---MGPLELADL 235
>At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP2)
identical to fatty acid multifunctional protein (AtMFP2)
GB:AF123254 [gi:4337027] (Arabidopsis thaliana) (fatty
acid beta-oxidation); contains Pfam profiles PF02737
(3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
PF00378 (enoyl-CoA hydratase/isomerase family protein),
PF00725 (3-hydroxyacyl-CoA dehydrogenase)
Length = 725
Score = 74.9 bits (176), Expect = 6e-14
Identities = 51/194 (26%), Positives = 90/194 (46%), Gaps = 3/194 (1%)
Query: 6 KSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLENDGLLRG 65
K +K+ I+G GL+G A Y V + +V K + I +K L + G +
Sbjct: 311 KIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQ 370
Query: 66 ELKASEQFQCIKGSTDLETAVKGAIFVQECVPENLDLKKKVFQNLDSVVDDNTIXXXXXX 125
E K + +KGS D E+ + V E V EN+ LK+++F +L+ + I
Sbjct: 371 E-KFEKTMSLLKGSLDYES-FRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTS 428
Query: 126 XXXXXXXXEGLKHKSQVIVSHPVNPPYYVPLVEIVPAPWTKPEVAKKTREIMEEIGQQPV 185
E K + +++ +H +P + +PL+EIV T +V ++ ++I + PV
Sbjct: 429 TIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPV 488
Query: 186 SLTREIDGFVLNRI 199
+ GF +NR+
Sbjct: 489 -VVGNCTGFAVNRM 501
>At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fatty
acid multifunctional protein (AIM1) identical to
gi:4337025; contains Pfam profiles PF02737
(3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
PF00378 (enoyl-CoA hydratase/isomerase family protein),
PF00725 (3-hydroxyacyl-CoA dehydrogenase)
Length = 721
Score = 69.3 bits (162), Expect = 3e-12
Identities = 57/255 (22%), Positives = 105/255 (41%), Gaps = 3/255 (1%)
Query: 8 EKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLENDGLLRGEL 67
+K+ ++G GL+G A +V + ++ ++ + I+ ++ + +L + G L +
Sbjct: 310 KKVAVIGGGLMGSGIATALLLSNIRVVLKEINSEFLMKGIKSVEANMKSLVSRGKLTQD- 368
Query: 68 KASEQFQCIKGSTDLETAVKGAIFVQECVPENLDLKKKVFQNLDSVVDDNTIXXXXXXXX 127
KA + KG D T V E V EN+ LK+ +F+ ++ V + I
Sbjct: 369 KAGKALSLFKGVLDY-TEFNDVDMVIEAVIENIQLKQNIFKEIEKVCSPHCILASNTSTI 427
Query: 128 XXXXXXEGLKHKSQVIVSHPVNPPYYVPLVEIVPAPWTKPEVAKKTREIMEEIGQQPVSL 187
E K +++ +H +P + +PL+EIV + T +V + + I + PV +
Sbjct: 428 DLDVIGEKTNSKDRIVGAHFFSPAHLMPLLEIVRSKNTSAQVILDLMAVGKAIKKVPVVV 487
Query: 188 TREIDGFVLNRIQYAILDEVWRLXXXXXXXXXXXXXXMSEGLGMRYAFLGALETAHLNAE 247
I GF +NR + L S GL + LG L +
Sbjct: 488 GNCI-GFAVNRTFFPYSQAAHMLANLGVDLFRIDSVITSFGLPLGPFQLGDLAGHGIGLA 546
Query: 248 GMQSYIDRYGETIYR 262
Y YG+ ++R
Sbjct: 547 VGPIYAKVYGDRMFR 561
>At4g13610.1 68417.m02118 DNA (cytosine-5-)-methyltransferase,
putative similar to cytosine-5 methyltransferase (METII)
[Arabidopsis thaliana] GI:6523846; contains Pfam
profiles PF01426: BAH domain, PF00145: C-5
cytosine-specific DNA methylase
Length = 1404
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/86 (22%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 17 LIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLENDGLLRG-ELKASEQFQC 75
LI R W ++ + + ++ A++ + +ED++ + E D + + E++ ++ +
Sbjct: 520 LINRIWGEFYSIYSPEDPLEEIGAEEEFEEVEDVEEEDENEEEDTIQKAIEVQKADTLKK 579
Query: 76 IKGS-TDLETAVKGAIFVQECVPENL 100
I+GS ++E +G I + C E L
Sbjct: 580 IRGSCKEMEIRWEGEILGETCAGEPL 605
>At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
;similar to 6-phosphogluconate dehydrogenase
GB:BAA22812 GI:2529229 [Glycine max]
Length = 486
Score = 31.1 bits (67), Expect = 1.0
Identities = 11/43 (25%), Positives = 26/43 (60%)
Query: 9 KIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIK 51
+IG+ G ++G++ A+ A G+ ++VY+ ++ + +E K
Sbjct: 7 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK 49
>At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
;similar to 6-phosphogluconate dehydrogenase
GB:BAA22812 GI:2529229 [Glycine max]
Length = 486
Score = 31.1 bits (67), Expect = 1.0
Identities = 11/43 (25%), Positives = 26/43 (60%)
Query: 9 KIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIK 51
+IG+ G ++G++ A+ A G+ ++VY+ ++ + +E K
Sbjct: 7 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK 49
>At4g39952.1 68417.m05658 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 726
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 135 GLKHKSQVIVSHPVNPPYYVPLVEIVPAPWTKPEVAKKTREIMEEIG 181
G++ + + S P N YY+ L + A K E A++ RE+M E G
Sbjct: 671 GIRMAERAVASDPQNDGYYIMLANMYSAA-GKWEEAERAREMMRESG 716
>At4g29120.1 68417.m04168 6-phosphogluconate dehydrogenase
NAD-binding domain-containing protein similar to
SP|P23523 2-hydroxy-3-oxopropionate reductase (EC
1.1.1.60) (Tartronate semialdehyde reductase)
{Escherichia coli}; contains Pfam profile PF03446: NAD
binding domain of 6-phosphogluconate dehydrogenase
Length = 334
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 9 KIGIVGSGLIGRSWAMLFASVGYQVTVYD 37
KIG +G+G++GRS GY VTV++
Sbjct: 39 KIGWIGTGVMGRSMCGHLIKAGYTVTVFN 67
>At3g04870.2 68416.m00529 zeta-carotene desaturase (ZDS1) /
carotene 7,8-desaturase identical to SP|Q38893
Zeta-carotene desaturase, chloroplast precursor (EC
1.14.99.30) (Carotene 7,8-desaturase) {Arabidopsis
thaliana}
Length = 558
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 9 KIGIVGSGLIGRSWAMLFASVGYQVTVYD 37
K+ I+G+GL G S A+ G++V +YD
Sbjct: 58 KVAIIGAGLAGMSTAVELLDQGHEVDIYD 86
>At3g04870.1 68416.m00528 zeta-carotene desaturase (ZDS1) /
carotene 7,8-desaturase identical to SP|Q38893
Zeta-carotene desaturase, chloroplast precursor (EC
1.14.99.30) (Carotene 7,8-desaturase) {Arabidopsis
thaliana}
Length = 558
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 9 KIGIVGSGLIGRSWAMLFASVGYQVTVYD 37
K+ I+G+GL G S A+ G++V +YD
Sbjct: 58 KVAIIGAGLAGMSTAVELLDQGHEVDIYD 86
>At1g22310.1 68414.m02791 DNA-binding protein-related contains Pfam
profiles PF02178: AT hook motif, PF01429: Methyl-CpG
binding domain
Length = 425
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 270 APRMTTNKSRNSVCEQL-EKLVPIEKLQDRRNWRDLCLMRLSL-LKKEMNKKYQSS 323
A R T N RN + + E ++P++ + R + DLC M + + +K++ K+ +SS
Sbjct: 15 ALRATLNHRRNLLRRNVRETILPVKNKRKSRRFSDLCSMSIRIRVKRKKTKERKSS 70
>At5g43810.1 68418.m05357 pinhead protein (PINHEAD) / zwille protein
(ZWILLE) identical to SP|Q9XGW1 PINHEAD protein (ZWILLE
protein) {Arabidopsis thaliana}; contains Pfam profiles
PF02171: Piwi domain, PF02170: PAZ domain
Length = 988
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 159 IVPAPWTKPEVAKKTREIMEEIGQQPVSLTREIDGFVLNR 198
I+PAPW K K ++ + ++GQ + + I+G ++R
Sbjct: 515 ILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSR 554
>At5g40610.1 68418.m04930 glycerol-3-phosphate dehydrogenase [NAD+]
/ GPDH strong similarity to SP|P52425
Glycerol-3-phosphate dehydrogenase [NAD+] (EC 1.1.1.8)
{Cuphea lanceolata}; contains Pfam profile PF01210:
NAD-dependent glycerol-3-phosphate dehydrogenase
Length = 400
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 4 KFKSEKIGIVGSGLIGRSWAMLFASVGYQVT-VYDVVAKQITDAIEDI 50
KF +G GS I +W LF++ + VT V+DV ++ ++++
Sbjct: 212 KFSEATVGYRGSREIADTWVQLFSTPYFMVTPVHDVEGVELCGTLKNV 259
>At4g34230.1 68417.m04864 cinnamyl-alcohol dehydrogenase, putative
similar to cinnamyl alcohol dehydrogenase, Nicotiana
tabacum [SP|P30359], Populus deltoides, PATCHX:G288753
Length = 357
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 11 GIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLENDGLLRGELKAS 70
GI+G G +G + ++G+ VTV K+ +A++D+ + + +D EL S
Sbjct: 185 GILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADS 244
>At2g01760.1 68415.m00106 two-component responsive regulator family
protein / response regulator family protein similar to
response regulator 9 (GI:14189890) [Zea mays]; similar
to ARR1 protein (GI:4210449) [Arabidopsis thaliana];
contains Pfam profile: PF00072 response regulator
receiver domain
Length = 382
Score = 29.1 bits (62), Expect = 4.2
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 55 HTLENDGLLRGELKASEQFQCIKGSTDLETAVKGAIFVQECVPENL----DLKKKVFQNL 110
H + +++ EL++S+ + K S LET V + V EC E+L + KKK +++
Sbjct: 126 HVVRRKCVMKKELRSSQALEDNKNSGSLETVV---VSVSECSEESLMKCRNKKKKKKRSV 182
Query: 111 DSVVDDN 117
D DDN
Sbjct: 183 DR--DDN 187
>At1g56000.1 68414.m06425 amine oxidase-related contains Pfam
profile PF01593: amine oxidase, flavin-containing
Length = 384
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 1 MASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYD 37
M+S + K+ ++GSG+ G A A G VT++D
Sbjct: 14 MSSVAVAMKVAVIGSGISGAVCASTLARNGVSVTIFD 50
>At1g55980.1 68414.m06421 expressed protein
Length = 464
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 1 MASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYD 37
M+S + K+ ++GSG+ G A A G VT++D
Sbjct: 152 MSSVAVAMKVAVIGSGISGAVCASTLARNGVSVTIFD 188
>At5g41670.2 68418.m05063 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
Length = 487
Score = 28.7 bits (61), Expect = 5.5
Identities = 9/40 (22%), Positives = 25/40 (62%)
Query: 9 KIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIE 48
+IG+ G ++G++ A+ A G+ ++VY+ ++ + ++
Sbjct: 8 RIGLAGLAVMGQNLALNIADKGFPISVYNRTTSKVDETLD 47
>At5g41670.1 68418.m05062 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
Length = 487
Score = 28.7 bits (61), Expect = 5.5
Identities = 9/40 (22%), Positives = 25/40 (62%)
Query: 9 KIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIE 48
+IG+ G ++G++ A+ A G+ ++VY+ ++ + ++
Sbjct: 8 RIGLAGLAVMGQNLALNIADKGFPISVYNRTTSKVDETLD 47
>At3g51620.1 68416.m05658 expressed protein
Length = 755
Score = 28.7 bits (61), Expect = 5.5
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 134 EGLKHKSQVIVSHPVNPPYYVPLVEIVPAPWTKPEVAKKTREIMEEIGQQPVSLTREID 192
+ L+ +S +S P+ PP PL + P W + E A TREI+E++ VS R D
Sbjct: 6 DDLEEESSSSLSPPLLPPPRSPLNQ--PELWMRVEEA--TREIIEQVHPTLVSEDRRRD 60
>At1g64190.1 68414.m07272 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
Length = 487
Score = 28.7 bits (61), Expect = 5.5
Identities = 9/40 (22%), Positives = 25/40 (62%)
Query: 9 KIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIE 48
+IG+ G ++G++ A+ A G+ ++VY+ ++ + ++
Sbjct: 8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETLD 47
>At5g52850.1 68418.m06560 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 893
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 147 PVNPPYYVPLVEIVPAPWTKPEVAKKTREIMEE------IGQQPVSLTREIDGFV 195
P +P Y+ L ++ KPE+A+KTR +M E +G+ V + ++ FV
Sbjct: 728 PSDPALYILLADLYDESG-KPELAQKTRNLMTEKRLSKKLGKSTVEVQGKVHSFV 781
>At5g45150.1 68418.m05543 ribonuclease III family protein similar to
CAF protein (RNA helicase/RNAseIII) [Arabidopsis
thaliana] GI:6102610; contains Pfam profiles PF00035:
Double-stranded RNA binding motif, PF00636 RNase3 domain
Length = 957
Score = 27.9 bits (59), Expect = 9.7
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 50 IKYQLHTLENDGLLRGELKASEQFQCIKGSTD-----LETAVKGAIFVQECVPENLDLKK 104
+K ++ +E ++G+ K +++ + S D LE++V + + ENLD KK
Sbjct: 874 VKIEIPNIEGTFHIKGDAKPTKK-EAENSSADHMIRALESSVMSLVITNLQMHENLDGKK 932
Query: 105 KVFQNLDSVVDDNTI 119
K Q +S+ ++ T+
Sbjct: 933 KNLQMKESLNENKTL 947
>At5g41430.1 68418.m05032 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 161
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 145 SHPVNPPYYVPLVEIVPAPWTKPEVAKKTREIM 177
SHP PP VPL +P P +P+ +T +M
Sbjct: 51 SHPSLPPLPVPLPLPLPQPQPQPQQDNETGHLM 83
>At1g71180.1 68414.m08213 6-phosphogluconate dehydrogenase
NAD-binding domain-containing protein similar to
SP|P23523 2-hydroxy-3-oxopropionate reductase (EC
1.1.1.60) (Tartronate semialdehyde reductase)
{Escherichia coli}; contains Pfam profile PF03446: NAD
binding domain of 6-phosphogluconate dehydrogenase
Length = 318
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 9 KIGIVGSGLIGRSWAMLFASVGYQVTVY 36
+IG +G G++G + + GY VTVY
Sbjct: 36 RIGWIGIGIMGSAMVSHIIAAGYSVTVY 63
>At1g71170.1 68414.m08212 6-phosphogluconate dehydrogenase
NAD-binding domain-containing protein contains Pfam
profile: PF03446 NAD binding domain of
6-phosphogluconate
Length = 299
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 9 KIGIVGSGLIGRSWAMLFASVGYQVTVY 36
+IG +G G++G + + GY VTVY
Sbjct: 15 RIGWIGIGIMGSAMVSHILAAGYSVTVY 42
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.134 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,787,283
Number of Sequences: 28952
Number of extensions: 254602
Number of successful extensions: 795
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 773
Number of HSP's gapped (non-prelim): 27
length of query: 323
length of database: 12,070,560
effective HSP length: 81
effective length of query: 242
effective length of database: 9,725,448
effective search space: 2353558416
effective search space used: 2353558416
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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