Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000418-TA|BGIBMGA000418-PA|IPR003534|Major royal jelly
protein, IPR000437|Prokaryotic membrane lipoprotein lipid attachment
site
         (310 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    29   0.84 
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    28   1.5  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    27   2.6  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    27   2.6  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   7.9  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    26   7.9  

>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 16  EAATPQLRFAWKE-VDYEWNTPAERENAIKSGAGNQIVRPSIV 57
           + AT QL F   E    E++ PA  E A +SG  N+  RP +V
Sbjct: 526 QCATIQLDFQLPERFQLEFHAPASAEEAKESGNNNKYTRPVMV 568


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query: 268 EGLMWILVDKLPRFLYKTLDPNEVNYSIYSISAKDAIAGTACE 310
           EG   I  D+L  FL K L P  +    YS+ +K +   + CE
Sbjct: 35  EGPKQISEDQLSNFLCKILKPTNLTPQTYSLESKSSNLVSDCE 77


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 25  AWKEVDYEWNTPAERENAIKSGAGNQIVRPSIVIFDLKTDQLLHRYFFKLEDMKEDS 81
           +W  V+ +WN+ ++ +   ++   +++V    +   L +D  LH    + ED+   S
Sbjct: 460 SWTTVNNDWNSVSKSDQTFENDGASKVVPAGNI--TLNSDNSLHHSISESEDLSSAS 514


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 160 ENGFRTMFFHAFSSTKEFCVSTELLRNYTHIDKQEAFHDFKLL 202
           +NGF  +FF  F S K+     ++  +   ++K E  + F+LL
Sbjct: 908 DNGFNGLFFMVFDSQKQRVHYGDMYTSSHTLEKGEYLYKFQLL 950


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/40 (32%), Positives = 16/40 (40%)

Query: 130  FEPLAGSYRVGGVEFHWTDGVFALALSEPRENGFRTMFFH 169
            + PLA S+    VE       F    S   E  F+ M FH
Sbjct: 1069 WNPLADSFSASNVEMQCVQAKFTYNDSNAYEKVFKPMLFH 1108


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 180 STELLRNYTHI-DKQEAFHDFKLLGDRGQGTQASASFYDPNTQVLF 224
           +T+ L  Y  + D  EA  + +L    G+G +A+A   DPN+++ F
Sbjct: 91  ATQCLERYQKLLDDLEAKENEQLGLISGEGAEAAAPVNDPNSRLRF 136


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.138    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,590,661
Number of Sequences: 5004
Number of extensions: 74338
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 155
Number of HSP's gapped (non-prelim): 6
length of query: 310
length of database: 2,362,478
effective HSP length: 73
effective length of query: 237
effective length of database: 1,997,186
effective search space: 473333082
effective search space used: 473333082
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)