Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000418-TA|BGIBMGA000418-PA|IPR003534|Major royal jelly
protein, IPR000437|Prokaryotic membrane lipoprotein lipid attachment
site
         (310 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45488| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_55368| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.033)           29   4.8  
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_45488| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 567

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 5/96 (5%)

Query: 28  EVDYEWNTPAERENAIKSGAGNQIVRPSIVIFDLKTDQLLHRYFFKLEDMKEDSFFANIV 87
           +VD+    P   E  I+ G    I   ++ I DLK D +   YF +  D  +     +  
Sbjct: 33  QVDFNHQAPLSEEQTIRGGLAAHIWY-NVCIADLK-DFITSNYFPRYPD-NQHVISESQT 89

Query: 88  VDVDQNTCDDAFAYI--PDLGGYGVVVYSLKQNDSW 121
               +N       YI  PD G Y + ++S  Q++ W
Sbjct: 90  TYAGRNYAQRIHGYIHPPDTGFYQIGLFSRGQSELW 125


>SB_55368| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.033)
          Length = 321

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 208 GTQASASFYDPNTQVLFY---GQVNRDGVGCWNSNKPYTPENNVLIFSDPKLYE--FPND 262
           G   S  FYD     LF    G++   GVG     K    E++V     PK YE  FP D
Sbjct: 45  GNPGSIEFYDIFIATLFSESGGKIPIYGVGHAGHTK--LEESSVFKCGRPKQYEQEFPTD 102

Query: 263 LKIDDE 268
           + +DD+
Sbjct: 103 MHLDDQ 108


>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1717

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 48   GNQIVRPSIVIFDLKTDQLLHRYFFKLEDMKEDS 81
            GN ++R + ++FDL+ D L  R F +L D  +DS
Sbjct: 1547 GN-VIRLTFIMFDLEDDPLCARDFLELMDGGQDS 1579


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.138    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,061,759
Number of Sequences: 59808
Number of extensions: 478789
Number of successful extensions: 743
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 743
Number of HSP's gapped (non-prelim): 3
length of query: 310
length of database: 16,821,457
effective HSP length: 82
effective length of query: 228
effective length of database: 11,917,201
effective search space: 2717121828
effective search space used: 2717121828
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)