Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000418-TA|BGIBMGA000418-PA|IPR003534|Major royal jelly
protein, IPR000437|Prokaryotic membrane lipoprotein lipid attachment
site
         (310 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX842568-3|CAI40150.1| 1035|Homo sapiens family with sequence si...    35   0.32 
AK125992-1|BAC86381.1|  910|Homo sapiens protein ( Homo sapiens ...    35   0.32 

>BX842568-3|CAI40150.1| 1035|Homo sapiens family with sequence
           similarity 47, member C protein.
          Length = 1035

 Score = 35.1 bits (77), Expect = 0.32
 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 11/94 (11%)

Query: 157 EPRENG---FRTMFFHAFSSTKEFCVSTELLRNYTHIDKQEAFHDFKLLGDRGQGTQASA 213
           EP + G    + +F    SST E CVS  L R +T         DFK  GD G   ++ +
Sbjct: 815 EPTKTGASHLKELFQEGTSSTME-CVSDSLQRRHT----SRKLRDFKWAGDLGVNEESIS 869

Query: 214 SFYD--PNTQVLFYGQVNRDGVGCWNSNKPYTPE 245
           S +D  P  +  +  Q N+    C +S   Y+ E
Sbjct: 870 SLFDFTPECRATYQDQKNKKANEC-SSGLKYSME 902


>AK125992-1|BAC86381.1|  910|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44004 fis, clone TESTI4023546, weakly  similar
           to Sialidase (EC 3.2.1.18). ).
          Length = 910

 Score = 35.1 bits (77), Expect = 0.32
 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 11/94 (11%)

Query: 157 EPRENG---FRTMFFHAFSSTKEFCVSTELLRNYTHIDKQEAFHDFKLLGDRGQGTQASA 213
           EP + G    + +F    SST E CVS  L R +T         DFK  GD G   ++ +
Sbjct: 690 EPTKTGASHLKELFQEGTSSTME-CVSDSLQRRHT----SRKLRDFKWAGDLGVNEESIS 744

Query: 214 SFYD--PNTQVLFYGQVNRDGVGCWNSNKPYTPE 245
           S +D  P  +  +  Q N+    C +S   Y+ E
Sbjct: 745 SLFDFTPECRATYQDQKNKKANEC-SSGLKYSME 777


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.322    0.138    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,124,148
Number of Sequences: 224733
Number of extensions: 2097628
Number of successful extensions: 5703
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5703
Number of HSP's gapped (non-prelim): 2
length of query: 310
length of database: 73,234,838
effective HSP length: 90
effective length of query: 220
effective length of database: 53,008,868
effective search space: 11661950960
effective search space used: 11661950960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 65 (30.3 bits)